a3fa5699e76f0ca4a07e3b6c4bf4c7f8de356c85
jcasper
  Fri Sep 29 09:15:52 2023 -0700
Forgot to check in makedocs for knownGeneV44 on hg38/m39, refs #30840, #30841

diff --git src/hg/makeDb/doc/ucscGenes/hg38.gencodeV44.sh src/hg/makeDb/doc/ucscGenes/hg38.gencodeV44.sh
new file mode 100644
index 0000000..2393ea7
--- /dev/null
+++ src/hg/makeDb/doc/ucscGenes/hg38.gencodeV44.sh
@@ -0,0 +1,21 @@
+export db=hg38
+export GENCODE_VERSION=V44
+export PREV_GENCODE_VERSION=V43
+screen -S knownGene${GENCODE_VERSION}
+mkdir /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
+cd /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
+PATH=$HOME/kent/src/hg/utils/otto/knownGene":$PATH"
+cp /hive/data/genomes/${db}/bed/gencode${PREV_GENCODE_VERSION}/build/buildEnv.sh  buildEnv.sh
+
+# edit buildEnv.sh
+. buildEnv.sh
+
+# NB: Had to manually construct the files.txt file; it was missing.
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.files.txt .
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.tables.txt .
+
+hgsql ${oldKnownDb} -Ne "show tables" > ${oldKnownDb}.tables.txt
+diff <(sort ${PREV_GENCODE_VERSION}.tables.txt) <(sort ${oldKnownDb}.tables.txt)
+# no difference
+
+buildKnown.sh &