a3fa5699e76f0ca4a07e3b6c4bf4c7f8de356c85
jcasper
  Fri Sep 29 09:15:52 2023 -0700
Forgot to check in makedocs for knownGeneV44 on hg38/m39, refs #30840, #30841

diff --git src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM33.sh src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM33.sh
index 61c71aa..ac83e08 100644
--- src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM33.sh
+++ src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM33.sh
@@ -1,32 +1,32 @@
 export db=mm39
 export GENCODE_VERSION=VM33
 export PREV_GENCODE_VERSION=VM32
 screen -S knownGene${GENCODE_VERSION}
 mkdir /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
 cd /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
 
 PATH=$HOME/kent/src/hg/utils/otto/knownGene":$PATH"
 cp /hive/data/genomes/${db}/bed/gencode${PREV_GENCODE_VERSION}/build/buildEnv.sh  buildEnv.sh
 
 # edit buildEnv.sh
  . buildEnv.sh
 
-cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.files.txt  ${GENCODE_VERSION}.files.txt
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.files.txt .
 # This failed on account of the V32 file was missing.  I reconstructed it and the V33 version by hand.
 
-cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.tables.txt  ${GENCODE_VERSION}.tables.txt
+cp ${oldGeneDir}/${PREV_GENCODE_VERSION}.tables.txt .
 
 hgsql ${oldKnownDb} -Ne "show tables" > ${oldKnownDb}.tables.txt
 diff <(sort ${PREV_GENCODE_VERSION}.tables.txt) <(sort ${oldKnownDb}.tables.txt)
 # no difference
 
 buildKnown.sh &
 # wait for completion
 
 tail -n 1 *.log
 # ==> doBioCyc.log <==
 # BuildBioCyc successfully finished
 #
 # ==> doBlast.log <==
 # BuildBlast successfully finished
 #