e813f6c7cfd2f8f110266c0824062964322d62a3
markd
  Wed Sep 20 00:01:21 2023 -0700
fixed problems handling overlapping PSL blocks caused by protein to NA alignemtns. Now handles internal coversions create overlapoing blocks

diff --git src/utils/pslMap/tests/input/protGencode.psl src/utils/pslMap/tests/input/protGencode.psl
new file mode 100644
index 0000000..cedb7d1
--- /dev/null
+++ src/utils/pslMap/tests/input/protGencode.psl
@@ -0,0 +1 @@
+277	3	0	0	1	42	2	186	++	O95831-1	613	0	322	ENST00000675774.1	1454	41	923	3	36,36,208,	0,78,114,	41,132,299,