1dedbd46c366091fd9d93d961b4b7b91d83ad743
max
  Mon Oct 2 07:50:55 2023 -0700
adding polygenic risk scores track, refs #31546

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index ebf4557..9fc6b64 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -35136,15 +35136,20 @@
         | tr :- ' ' \
         | sed -e 's/positive/positive\t255,0,0/'\
         | sed -e 's/negative/negative\t0,0,255/' \
         | awk '{print $1"\t"($2-1)"\t"$3"\ths"$6"\t0\t.\t"$2"\t"$3"\t"$9"\t"$8"\t"$6}' \
         | grep -P -v "^chr\t" \
         > vistaEnhancers.bed
 bedSort vistaEnhancers.bed sortedVistaEnhancers.bed
 bedToBigBed -tab -type=bed9+ -as=vistaEnhancers.as sortedVistaEnhancers.bed https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes vistaEnhancers.bb
 cd /gbdb/hg19
 mkdir vistaEnhancers; cd vistaEnhancers
 # Making symlink for big files
 ln -s /hive/data/outside/vistaEnhancers/hg19/vistaEnhancers.bb
 cd ~/kent/src/hg/makeDb/trackDb/human/hg19
 vi trackDb.ra
 #############################################################################
+# Polygenic risk scores, Zia Truong (committed by Max)
+# Mon Oct  2 04:44:39 PDT 2023
+cd /hive/data/genomes/hg19/bed/prsEmerge/
+sh ~/kent/src/hg/makeDb/scripts/prsEmerge/prs2bigBed.sh 
+#############################################################################