1dedbd46c366091fd9d93d961b4b7b91d83ad743
max
  Mon Oct 2 07:50:55 2023 -0700
adding polygenic risk scores track, refs #31546

diff --git src/hg/makeDb/scripts/prsEmerge/prs2bigBed.sh src/hg/makeDb/scripts/prsEmerge/prs2bigBed.sh
new file mode 100644
index 0000000..7a1420e
--- /dev/null
+++ src/hg/makeDb/scripts/prsEmerge/prs2bigBed.sh
@@ -0,0 +1,17 @@
+# written by Zia Truong and slightly adapted by Max and committed
+echo "Converting PRS files to BED files..."
+mkdir output
+wait
+
+python3 ~/kent/src/hg/makeDb/scripts/prsEmerge/prs2bed.py # iterates over files in data/, writes to output/
+
+echo "Converting BED files to bigBED files..."
+#looping through files for loop code based on https://stackoverflow.com/a/10523501
+for bed in ./output/*.bed
+do
+  sort -k1,1 -k2,2n "${bed}" -o "${bed}"
+  bedToBigBed -as=prs.as -type=bed9+2 "${bed}" /hive/data/genomes/hg19/chrom.sizes "${bed}.bb"
+  rm ${bed}
+done
+
+echo "Done!"