Commits for braney

v456_preview2 to v456_base (2023-10-23 to 2023-10-30) v456

c014c28fd9dc9e242005a07430bd9f1a3edbd4a2 Wed Oct 18 12:44:02 2023 -0700

• oops fix typo
  • src/hg/makeDb/trackDb/human/hg38/hprcArr.ra - lines changed 1, context: html, text, full: html, text

52e47105152b7e5dd2621b9e8439446e0d77336f Mon Oct 23 12:01:11 2023 -0700

• build Jaspar 2024 motif table
  • src/hg/makeDb/doc/hgFixed.txt - lines changed 11, context: html, text, full: html, text

81ef31c5abe6dba3c4dfa96725f2912c2183fc8b Mon Oct 23 16:38:46 2023 -0700

• fix doOmimGene2.sh to not throw away items with the same start coordinate.
  • src/hg/utils/otto/omim/doOmimGene2.sh - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/otto/omim/makefile - lines changed 1, context: html, text, full: html, text

6093365dc43da304b632706394a77a1713965635 Tue Oct 24 12:58:59 2023 -0700

• stop checking for data accessibility on the assumption that the trackDb build already did that. Add a little side-effect up higher in the call chain. This should probably be somewhere else, but in fear of breaking something new, I'm just popping it up one link in the call chain.
  • src/hg/lib/hdb.c - lines changed 11, context: html, text, full: html, text

136d37467b6957c38976c8bd98bdb942e8514bb6 Fri Oct 27 16:27:09 2023 -0700

• add chainInDel command to build HPRC indels track
  • src/hg/utils/chainInDel/chainInDel.c - lines changed 110, context: html, text, full: html, text
  • src/hg/utils/chainInDel/makefile - lines changed 3, context: html, text, full: html, text