75479452cf7a3eeeb3844e02cec904789d2bc14a hiram Wed Oct 25 15:01:28 2023 -0700 VGP update adding 9 mammal assemblies refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 64d5e02..8e42552 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -132,64 +132,70 @@ GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017976375.1_bCucCan1.pri birds GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds GCA_020826845.1_mDicBic1.mat.cur mammals GCA_023634155.1_bFalPer1.pri birds GCA_023634085.1_bFalChe1.pri birds GCA_023638135.1_bFalBia1.pri birds +GCA_025265405.1_mMesDen1_primary_haplotype mammals GCA_026419965.1_mKogBre1_haplotype_1 mammals GCA_027579445.1_bAmmNel1.pri birds GCA_027887145.1_bAmmCau1.pri birds GCA_027887165.1_mMonDom1.pri mammals GCA_028018845.1_bMelGeo1.pri birds +GCA_028023285.1_mBalRic1.hap2 mammals GCA_028500815.1_bRisTri1.patW.cur.20221130 birds +GCA_030867065.1_rAllMis1 vertebrate GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_902686455.1_mSciVul1.1 mammals GCA_904849725.1_MorexV3_pseudomolecules_assembly plants GCA_905147045.1_ilAglIoxx1.1 invertebrate GCA_905147105.1_ilPieBrab1.1 invertebrate GCA_905147365.1_ilAriAges1.1 invertebrate GCA_905147765.2_ilVanAtal1.2 invertebrate GCA_905147795.1_ilPieRapa1.1 invertebrate GCA_905163445.1_ilParAegt1.1 invertebrate GCA_905220365.1_ilVanCard2.1 invertebrate GCA_905220415.1_ilColCroc2.1 invertebrate GCA_905220565.1_ilMelCinx1.1 invertebrate GCA_905237065.2_Ssal_v3.1 fish GCA_905333055.1_ilManJurt1.1 invertebrate GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate GCA_947179515.1_mApoSyl1.1 mammals +GCA_949774975.1_mLagAlb1.1 mammals +GCA_949987515.1_mDelDel1.1 mammals +GCA_950295315.1_mEriEur2.1 mammals GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates GCF_000005975.2_dyak_caf1 invertebrate GCF_000006175.1_ASM617v2 archaea GCF_000090795.1_v1.0 invertebrate @@ -251,30 +257,31 @@ GCF_001659605.1_Manihot_esculenta_v6 plants GCF_001660625.1_IpCoco_1.2 fish GCF_001660625.2_IpCoco_1.2 fish GCF_001663975.1_Xenopus_laevis_v2 vertebrate GCF_001687245.1_Rhagoletis_zephyria_1.0 invertebrate GCF_001698545.1_ASM169854v1 primates GCF_001704415.1_ARS1 mammals GCF_001890085.1_ASM189008v1 mammals GCF_001891065.1_H_comes_QL1_v1 fish GCF_002007445.1_ASM200744v2 mammals GCF_002021735.1_Okis_V1 fish GCF_002093755.1_Dser1.0 invertebrate GCF_002162155.1_WEW_v2.0 plants GCF_002201575.1_ASM220157v1 mammals GCF_002263795.1_ARS-UCD1.2 mammals +GCF_002263795.2_ARS-UCD1.3 mammals GCF_002532875.1_vjacob_1.0 invertebrate GCF_002571385.1_Stylophora_pistillata_v1 invertebrate GCF_002706865.1_ASM270686v1 invertebrate GCF_002776525.2_ASM277652v2 primates GCF_002776525.3_ASM277652v3 primates GCF_002776525.4_ASM277652v4 primates GCF_002806865.1_ASM280686v2 plants GCF_002814215.1_Sedor1 fish GCF_002837175.2_ASM283717v2 mammals GCF_002870075.1_Lsat_Salinas_v7 plants GCF_002870075.2_Lsat_Salinas_v7 plants GCF_002870075.3_Lsat_Salinas_v8 plants GCF_002906115.1_CorkOak1.0 plants GCF_002922805.1_Om_v0.7.RACA fish GCF_002940915.1_ASM294091v2 mammals