c9ddf4ca037d9b61b462b77da54bc2f5b14726be chmalee Wed Oct 11 12:05:59 2023 -0700 Revert historical refSeq track changes This reverts the following commits 5f7b28612df1ff4e29c31020b33f8fee9c097b11 346fa22af4717e4d8bdaa6a22a873ac4324c357b d2346420237f134dff79722739380d022c5ec48d fbcacfcd4a8baadb31fca8b07c8f831580c31c82 db4660fe604ccb1b21aa3b5dfe3421cf8ac662eb bbca1ee6f90a46e7a139434849dbf32bd206b522 diff --git src/hg/inc/hdb.h src/hg/inc/hdb.h index 6609eea..598300b 100644 --- src/hg/inc/hdb.h +++ src/hg/inc/hdb.h @@ -1041,33 +1041,30 @@ struct trackDb *hFindLatestSnpTrack(char *db, char *suffix, struct trackDb **pFullTrackList); /* Return the 'snpNNN<suffix>' track with the highest build number, if any. * suffix may be NULL to get the 'All SNPs' table (as opposed to Common, Flagged, Mult). */ char *hFindLatestSnpTableConn(struct sqlConnection *conn, char *suffix); /* Return the name of the 'snp1__<suffix>' table with the highest build number, if any. * suffix may be NULL to get the 'All SNPs' table (as opposed to Common, Flagged, Mult). */ char *hFindLatestGencodeTableConn(struct sqlConnection *conn, char *suffix); /* Return the 'wgEncodeGencode<suffix>V<version>' table with the highest version number, if any. * If suffix is NULL, it defaults to Basic. */ boolean hDbHasNcbiRefSeq(char *db); /* Return TRUE if db has NCBI's RefSeq alignments and annotations. */ -boolean hDbHasNcbiRefSeqOld(char *db); -/* Return TRUE if db has NCBI's Historical RefSeq alignments and annotations. */ - char *hRefSeqAccForChrom(char *db, char *chrom); /* Return the RefSeq NC_000... accession for chrom if we can find it, else just chrom. * db must never change. */ char *abbreviateRefSeqSummary(char *summary); /* strip off the uninformative parts from the RefSeq Summary text: the repetitive note * about the publication subset and the Evidence-Data-Notes */ boolean isMito(char *chrom); /* Return True if chrom is chrM or chrMT */ char *hdbDefaultKnownDb(char *db); /* Get the default knownGene database from the defaultKnown table. */ char *hdbGetMasterGeneTrack(char *knownDb);