d5932e4051a4885f0036831cdfc5fbf1eb08a499 lrnassar Tue Oct 10 17:16:27 2023 -0700 Fixing broken blog links, refs #32439 diff --git src/hg/htdocs/goldenPath/help/wiggle.html src/hg/htdocs/goldenPath/help/wiggle.html index d248022..e5a2d3a 100755 --- src/hg/htdocs/goldenPath/help/wiggle.html +++ src/hg/htdocs/goldenPath/help/wiggle.html @@ -137,31 +137,31 @@ <p> The bedGraph format, like all BED-based formats and most file formats used by UCSC, use "0-start, half-open" coordinates, but the wiggle ASCII text format for variableStep and fixedStep data uses "1-start, fully-closed" coordinates. Wiggle (variableStep and fixedStep) is the only format defined by UCSC that uses a 1-based format, for historical reasons. For example, for a chromosome of length N, the first position is 1 and the last position is N. For more information, see: <ul> <li> <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20639541/" target="_blank">BigWig and BigBed: enabling browsing of large distributed datasets</a> (<em>Bioinformatics</em>)</li> <li> <a href="../../FAQ/FAQtracks.html#tracks1">Database/browser start coordinates differ by 1 base</a> (Genome Browser FAQ)</li> <li> - <a href="http://genome.ucsc.edu/blog/the-ucsc-genome-browser-coordinate-counting-systems/" + <a href="https://genome-blog.gi.ucsc.edu/blog/the-ucsc-genome-browser-coordinate-counting-systems/" target="_blank">The UCSC Genome Browser Coordinate Counting Systems</a> (Genome Browser blog)</li> </ul> <h3>Parameters for custom wiggle track definition lines</h3> <p> All options are placed in a single line separated by spaces (line breaks are inserted in the following example to facilitate readability):</p> <pre><code><strong>track type</strong>=wiggle_0 <strong>name</strong>=<em>track_label</em> <strong>description=</strong><em>center_label</em> <strong>visibility=</strong><em>display_mode</em> <strong>color=</strong><em>r,g,b</em> <strong>altColor=</strong><em>r,g,b</em> <strong>priority=</strong><em>priority</em> <strong>autoScale=</strong><em>on|off</em> <strong>alwaysZero=</strong><em>on|off</em> <strong>gridDefault=</strong><em>on|off</em> <strong>maxHeightPixels=</strong><em>max:default:min</em> <strong>graphType=</strong><em>bar|points</em>