279143838dbbba19a628e2f0658bc856deba6c95
lrnassar
  Mon Oct 9 14:51:40 2023 -0700
Removing tracks from the covid bluebar group to make room for HPRC, refs #32213

diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra
index 758ccef..24a7329 100644
--- src/hg/makeDb/trackDb/human/covidHgiGwas.ra
+++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra
@@ -1,40 +1,40 @@
 track covidHgiGwasR4Pval
 shortLabel COVID GWAS v4
 longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
 compositeTrack on
-group covid
+group varRep
 visibility hide
 autoScale on
 maxHeightPixels 48:75:128
 type bigLolly 9 +
 lollyField 13
 mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount
 maxItems 500000
 viewLimits 0:10
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
 filter.effectSize -1.6:2.2
 filterLimits.effectSize -1.6:2.2
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0
 filterLabel._effectSizeAbs Minimum effect size +-
 noScoreFilter on
 bedNameLabel SNP
-priority 1
+priority 2
 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
 
     track covidHgiGwasR4PvalA2
     parent covidHgiGwasR4Pval on
     shortLabel Severe COVID vars
     longLabel Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.A2.$D.bb
     priority 1
 
     track covidHgiGwasR4PvalB2
     parent covidHgiGwasR4Pval on
     shortLabel Hosp COVID vars
     longLabel Hospitalized COVID risk variants from the COVID-19 HGI GWAS Analysis B2 (7885 cases, 21 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.B2.$D.bb
     priority 2
@@ -45,49 +45,50 @@
     longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C1.$D.bb
     priority 3
 
     track covidHgiGwasR4PvalC2
     parent covidHgiGwasR4Pval on
     shortLabel All COVID vars
     longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C2.$D.bb
     priority 4
 
 track covidHgiGwas
 shortLabel COVID GWAS v3
 longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative
 compositeTrack on
-group covid
+group varRep
 visibility hide
 autoScale on
 maxHeightPixels 48:75:128
 type bigLolly 9 +
 lollyField 21
 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
 maxItems 500000
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
 viewLimits -13:21
 filter.effectSize -13:21
 filterLimits.effectSize -13:21
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0
 filterLabel._effectSizeAbs Minimum effect size +-
 noScoreFilter on
 bedNameLabel SNP
+priority 2.1
 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
 
     track covidHgiGwasC2
     parent covidHgiGwas on
     shortLabel COVID GWAS
     longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasC2.$D.bb
 
     track covidHgiGwasB2
     parent covidHgiGwas off
     shortLabel Hosp COVID GWAS
     longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasB2.$D.bb