308bed30e11953a0dc802743c98181ce7f409dd9
markd
  Tue Oct 10 20:23:18 2023 -0700
import of pre-release of GENCODE V45, VM34, and V45lift37

diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk
index 8fc0439..23fc4ef 100644
--- src/hg/makeDb/outside/gencode/gencodeLoad.mk
+++ src/hg/makeDb/outside/gencode/gencodeLoad.mk
@@ -20,64 +20,64 @@
 host=$(shell hostname)
 ppid=$(shell echo $$PPID)
 tmpExt = ${host}.${ppid}.tmp
 SHELL = bash -e
 export SHELLOPTS=pipefail
 
 ##
 # programs, etc
 ##
 mach = $(shell uname -m)
 
 ##
 # Release info and files from Sanger.
 # BEGIN EDIT THESE EACH RELEASE
 ##
-preRelease = no
-#preRelease = yes
+#preRelease = no
+preRelease = yes
 #db = hg38
-db = hg19
-#db = mm39
-#db = mm10
+#db = hg19
+db = mm39
 ifeq (${db},mm10)
+    # mm10 lift back was never revewed and released
     grcRefAssembly = GRCm38
     verBase = M25
     prevVer = M24
     backmapTargetVer = M25
     ver = ${verBase}lift37
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${verBase}/GRCm38_mapping
     annGffTypeName = chr_patch_hapl_scaff.annotation
     isBackmap = yes
 else ifeq (${db},mm39)
     grcRefAssembly = GRCm39
-    ver = M33
-    prevVer = M32
+    ver = M34
+    prevVer = M33
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
 else ifeq (${db},hg38)
     grcRefAssembly = GRCh38
-    ver = 44
-    prevVer = 43
+    ver = 45
+    prevVer = 44
     gencodeOrg = Gencode_human
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
 else ifeq (${db},hg19)
     grcRefAssembly = GRCh37
-    verBase = 44
-    prevVer = 43lift37
+    verBase = 45
+    prevVer = 44lift37
     ver = ${verBase}lift37
     backmapTargetVer = 19
     ftpReleaseSubdir = release_${verBase}/GRCh37_mapping
     gencodeOrg = Gencode_human
     annGffTypeName = annotation
     isBackmap = yes
 else
     $(error unimplement genome database: ${db})
 endif
 # END EDIT THESE EACH RELEASE
 
 
 ifeq (${preRelease},yes)
     # pre-release
     baseUrl = rsync://ftp.ebi.ac.uk/pub/databases/havana/gencode_pre