a78a9f5e02063bcb252a9e3fe47f6699990ba15d gperez2 Tue Nov 14 12:47:08 2023 -0800 Code review edits, adding the relative path to an image and adding a missing period, refs #32467 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 5d1748f..9743a99 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -59,31 +59,31 @@ For the full list of our daily code changes head to <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>our GitHub page</a>.</p> <!-- ============= 2023 archived news ============= --> <a name="2023"></a> <a name="110823"></a> <h2>Nov. 08, 2023 New track decorators feature</h2> <p> We are excited to introduce the new track decorators feature which allows highlighting parts of features with colors and/or symbols (glyphs/shapes) within a single track. </p> <div class="text-center"> <a href="http://genome.ucsc.edu/s/gperez2/RM_32467" target="_blank"> - <img src="/images/newsArchImages/feature_decorators.png" style="width:80%;max-width:1083px"></a> + <img src="../images/newsArchImages/feature_decorators.png" style="width:80%;max-width:1083px"></a> </div> <p> The genome browser‘s primary way to annotate the genome uses colored rectangles (“exons” for gene tracks) linked by thin lines (“introns”), often stored as a bigBed. These were originally used for genes but then evolved to cover other types of annotations, e.g. enhancers, chromatin modifications, or single nucleotide variants. We usually call these annotations “features”. Each rectangle (“exon”) of a feature has the same color and individual parts cannot be highlighted. If you wanted to highlight parts of the features, traditionally this required a second track. </p> <div class="text-center"> <img src="../../images/runx2.png" style="width:80%;max-width:1083px"> </div> <p> Track decorators change this: in your custom track and track hubs, you can now highlight parts of a @@ -94,31 +94,31 @@ could be used to overlay protein domain boundaries on transcripts where usually one would use an entirely different track for the domains. </p> <div class="text-center"> <img src="../../images/runx2_decorator.png" style="width:80%;max-width:1083px"> </div> <p> The “glyph” style option offers 8 different types of glyphs and the color of choice. </p> <div class="text-center"> <img src="../../images/glyphsEx.png" style="width:40%;max-width:1083px"> </div> <p> The “glyph” style option can be used to draw entirely new symbols, for example, to indicate insertion positions on the genome with small triangles. For more information, see the -<a href="/goldenPath/help/decorator.html" target="_blank">Track Decorators help page</a></p> +<a href="/goldenPath/help/decorator.html" target="_blank">Track Decorators help page</a>.</p> <p> We would like to thank Jonathan Casper, Max Haeussler, Mark Diekhans, and Gerardo Perez for their work on this release. We appreciate user feedback. If you have questions, feedback, suggestions, glyph style requests, or have found new glyph applications, please contact our <a href="mailto:genome@soe.ucsc.edu">mailing list</a>. We would appreciate responses on the creative ways of using the new track decorators feature. </p> <a name="102323"></a> <h2>Oct. 23, 2023 eMERGE polygenic risk scores for human (hg19)</h2> <p> We are pleased to announce the release of the <a href="/cgi-bin/hgTrackUi?db=hg19&position=default&g=prsEmerge">eMerge polygenic risk scores</a> for the human assembly GRCh37/hg19. Polygenic risk scores (PRS) have clinical utility and are the result of many years of GWAS studies. A score is given for a combination of SNPs to calculate the