59124205fd38e7898cd2924316d3fcb119b14bcc
max
  Fri Nov 17 07:53:35 2023 -0800
hiding OMIM tracks in gbib, email from Alexander Stuy

diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh
index 2673e43..3f1bce9 100644
--- src/product/installer/browserSetup.sh
+++ src/product/installer/browserSetup.sh
@@ -1718,31 +1718,31 @@
     if [ "$DBS" == "" ] ; then
         echo2 Argument error: the '"minimal"' command requires at least one assembly name, like hg19 or mm10.
         exit 100
     fi
 
     echo2
     echo2 Downloading minimal tables for databases $DBS 
 
     # only these db tables are copied over by default
     minRsyncOpt="--include=cytoBand.* --include=chromInfo.* --include=cytoBandIdeo.* --include=kgColor.* --include=knownAttrs.* --include=knownGene.* --include=knownToTag.* --include=kgXref.* --include=ensemblLift.* --include=ucscToEnsembl.* --include=wgEncodeRegTfbsCells.* --include=encRegTfbsClusteredSources.* --include=tableList.* --include=refSeqStatus.* --include=wgEncodeRegTfbsCellsV3.* --include=extFile.* --include=trackDb.* --include=grp.* --include=ucscRetroInfo5.* --include=refLink.* --include=ucscRetroSeq5.* --include=ensemblLift.* --include=knownCanonical.* --include=gbExtFile.* --include=flyBase2004Xref --include=hgFindSpec.* --include=ncbiRefSeq*"
 
     # these tables are not used for searches by default. Searches are very slow. We focus on genes.
     notSearchTables='wgEncodeGencodeBasicV19 wgEncodeGencodeCompV17 wgEncodeGencodeBasicV14 wgEncodeGencodeBasicV17 wgEncode GencodeCompV14 mgcFullMrna wgEncodeGencodeBasicV7 orfeomeMrna wgEncodeGencodePseudoGeneV14 wgEncodeGencodePseudoGeneV17 wgEncodeGencodePseudoGeneV19 wgEncodeGencodeCompV7 knownGeneOld6 geneReviews transMapAlnSplicedEst gbCdnaInfo oreganno vegaPseudoGene transMapAlnMRna ucscGenePfam qPcrPrimers transMapAlnUcscGenes transMapAlnRefSeq genscan bacEndPairs fosEndPairs'
 
     # these tracks are hidden by default
-    hideTracks='intronEst cons100way cons46way ucscRetroAli5 mrna omimGene2'
+    hideTracks='intronEst cons100way cons46way ucscRetroAli5 mrna omimGene2 omimAvSnp'
 
     stopMysql
 
     for db in $DBS; do
        echo2 Downloading Mysql files for mysql database $db
        $RSYNC $minRsyncOpt --exclude=* --progress -avp $RSYNCOPTS $HGDOWNLOAD::mysql/$db/ $MYSQLDIR/$db/ 
        chown -R $MYSQLUSER:$MYSQLUSER $MYSQLDIR/$db
     done
 
     echo2 Copying hgFixed.trackVersion, required for most tracks
     $RSYNC --progress -avp $RSYNCOPTS $HGDOWNLOAD::mysql/hgFixed/trackVersion.* $MYSQLDIR/hgFixed/ 
     echo2 Copying hgFixed.refLink, required for RefSeq tracks across all species
     $RSYNC --progress -avp $RSYNCOPTS $HGDOWNLOAD::mysql/hgFixed/refLink.* $MYSQLDIR/hgFixed/
     chown -R $MYSQLUSER:$MYSQLUSER $MYSQLDIR/hgFixed