68684c7c01875a771889d1fd03354f58bae34427
braney
  Tue Oct 31 15:01:59 2023 -0700
rename bedCollect to chainArrangeCollect in response to code review

diff --git src/hg/lib/chainArrange.sql src/hg/lib/chainArrange.sql
new file mode 100644
index 0000000..6247b21
--- /dev/null
+++ src/hg/lib/chainArrange.sql
@@ -0,0 +1,22 @@
+# chainArrange.sql was originally generated by the autoSql program, which also 
+# generated chainArrange.c and chainArrange.h.  This creates the database representation of
+# an object which can be loaded and saved from RAM in a fairly 
+# automatic way.
+
+#A list of assembly rearrangements
+CREATE TABLE chainArrange (
+    chrom varchar(255) not null,	# Chromosome (or contig, scaffold, etc.)
+    chromStart int unsigned not null,	# Start position in chromosome
+    chromEnd int unsigned not null,	# End position in chromosome
+    name varchar(255) not null,	# Name of item
+    score int unsigned not null,	# Score from 0-1000
+    strand char(1) not null,	# + or -
+    thickStart int unsigned not null,	# Start of where display should be thick (start codon)
+    thickEnd int unsigned not null,	# End of where display should be thick (stop codon)
+    itemRgb int unsigned not null,	# Color
+    source longblob not null,	# List of assemblies where break occures
+    querySize int unsigned not null,	# size of item on query side
+    label varchar(255) not null,	# label for item
+              #Indices
+    PRIMARY KEY(chrom)
+);