028a5f9e95d21de9cd9ab29cb2f6a340f74cf571
mspeir
  Sat Nov 11 17:05:13 2023 -0800
Add link to Sequence Ontology website, refs #32540

diff --git src/hg/makeDb/trackDb/human/dbSnp155Composite.html src/hg/makeDb/trackDb/human/dbSnp155Composite.html
index 94f2b71..bca4d8b 100644
--- src/hg/makeDb/trackDb/human/dbSnp155Composite.html
+++ src/hg/makeDb/trackDb/human/dbSnp155Composite.html
@@ -718,30 +718,34 @@
 <a href="https://exac.broadinstitute.org" target=_blank>ExAC</a>
 </li>
 <li>
 <a href="https://gnomad.broadinstitute.org/" target=_blank>GnomAD_exomes</a>
 </li>
 <li>
 <a href="https://thl.fi/en/web/thlfi-en/research-and-development/research-and-projects/the-national-finrisk-study" target=_blank>FINRISK</a>
 </li>
 <li>
 <a href="https://www.pharmgkb.org" target=_blank>PharmGKB</a>
 </li>
 <li>
 <a href="https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJEB37766" target=_blank>PRJEB37766</a>
 </li>
 </ol>
+The functional effect (maxFuncImpact) for each variant contains the
+<a href="http://www.sequenceontology.org/browser/obob.cgi" target="_blank">Sequence
+Ontology (SO)</a> ID for the greatest functional impact on the gene. This field
+contains a 0 when no SO terms are annotated on the variant.
 </p><p>
 UCSC also has an
 <a href="../goldenPath/help/api.html"
    target=_blank>API</a>
 that can be used to retrieve values from a particular chromosome range.
 </p><p>
 A list of rs# IDs can be pasted/uploaded in the
 <a href="hgVai" target=_blank>Variant Annotation Integrator</a>
 tool to find out which genes (if any) the variants are located in,
 as well as functional effect such as intron, coding-synonymous, missense, frameshift, etc.
 </p><p>
 Please refer to our searchable
 <A HREF="https://groups.google.com/a/soe.ucsc.edu/forum/?hl=en&fromgroups#!search/download+snps"
 target=_blank>mailing list archives</a>
 for more questions and example queries, or our