303cc7fe3c22a430303783b284c830846f535eaf hiram Fri Dec 8 07:41:09 2023 -0800 make the table header sticky so it will stay at the top of the page when scrolled refs #28930 diff --git src/hg/gar/garTable.pl src/hg/gar/garTable.pl index abef90d..efcc16e 100755 --- src/hg/gar/garTable.pl +++ src/hg/gar/garTable.pl @@ -726,31 +726,31 @@ if (defined($usedGenArk{$genArkAsmId})) { ++$usedGenArk; printf STDERR "# used genArk %s %s %s\n", $genArkAsmId, $gClade, $genArkAsm{$genArkAsmId} if ($usedGenArk < 5); } else { ++$missedGenArk; printf STDERR "# missed genArk %s %s %s\n", $genArkAsmId, $gClade, $genArkAsm{$genArkAsmId} if ($gClade !~ m/viral|bacteria/); } } printf STDERR "# should be UCSC RR %s, used GenArk: %s, missed GenArk: %s\n", commify($shouldBeUcsc), commify($usedGenArk), commify($missedGenArk); printf "
\n"; if ( 1 == 0 ) { printf "\n"; printf "\n"; printf "\n"; -printf "\n"; +printf "\n"; printf "\n"; printf "\n"; printf "\n"; printf "\n"; printf "\n"; printf "\n"; printf "\n"; printf "\n", commify($ncbiTotalAssemblies); printf "\n", commify($ncbiUniqueSpecies); printf "\n", commify($ncbiSpeciesUsed); printf "\n", commify($iucnSpeciesCount); printf "\n", commify($iucnSpeciesUsed); printf "\n", commify($totalGoodToGo); foreach my $clade (@clades) { if (defined($cladeCounts{$clade})) {
===== summary counts =====
number of assembliescategory of counttable data in tsv
(tab separated value)
file format
assembly minimal size
to filter out projects that
are not whole genomes
%stotal number of NCBI assemblies under consideration  
%snumber of unique species in NCBI assemblies  
%snumber of unique NCBI species matched to IUCN classification  
%snumber of IUCN species with CR/EN/VU classification  
%snumber of such IUCN species matched to NCBI assemblies  
%stotal number of NCBI assemblies classified in these tables