ee07d5a59eb7fb9bf1062741f44c77388e16c40a
lrnassar
  Mon Dec 4 15:11:41 2023 -0800
Restructuring the RefSeqComposite track to be at the mouse and human level so that we can add an override at the hg38/hg19/mm10/mm39 level. The motivation is to have the RefSeq all track on my default for non human and mouse assemblies, but keep only curated for human and mouse. Refs #32716

diff --git src/hg/makeDb/trackDb/mouse/trackDb.ra src/hg/makeDb/trackDb/mouse/trackDb.ra
index 53cbd6a..5e47267 100644
--- src/hg/makeDb/trackDb/mouse/trackDb.ra
+++ src/hg/makeDb/trackDb/mouse/trackDb.ra
@@ -854,16 +854,28 @@
 #semiShortCircuit 1
 termRegex rs[0-9]+
 searchPriority 12.9863
 padding 250
 
 searchTable snp142
 searchMethod exact
 searchType bed
 semiShortCircuit 1
 termRegex rs[0-9]+
 searchPriority 12.9864
 padding 250
 
 include jaspar.ra
 
+include ../refSeqComposite.ra
 
+track ncbiRefSeqSelect
+parent refSeqComposite off
+priority 8
+type genePred
+shortLabel RefSeq Select
+longLabel NCBI RefSeq Select: One representative transcript per protein-coding gene
+trackHandler ncbiRefSeq
+idXref ncbiRefSeqLink mrnaAcc name
+color 20,20,160
+baseColorUseCds given
+baseColorDefault genomicCodons