ee07d5a59eb7fb9bf1062741f44c77388e16c40a
lrnassar
  Mon Dec 4 15:11:41 2023 -0800
Restructuring the RefSeqComposite track to be at the mouse and human level so that we can add an override at the hg38/hg19/mm10/mm39 level. The motivation is to have the RefSeq all track on my default for non human and mouse assemblies, but keep only curated for human and mouse. Refs #32716

diff --git src/hg/makeDb/trackDb/refSeqComposite.ra src/hg/makeDb/trackDb/refSeqComposite.ra
index d8282fc..26d25db 100644
--- src/hg/makeDb/trackDb/refSeqComposite.ra
+++ src/hg/makeDb/trackDb/refSeqComposite.ra
@@ -3,31 +3,31 @@
 shortLabel NCBI RefSeq
 longLabel RefSeq genes from NCBI
 group genes
 visibility dense
 type genePred
 dragAndDrop subTracks
 noInherit on
 #subGroup1 view Views aNcbiRefSeq=NCBI_RefSeq zUcscRefSeq=UCSC_RefSeq
 allButtonPair on
 dataVersion /gbdb/$D/ncbiRefSeq/ncbiRefSeqVersion.txt
 priority 2
 dbPrefixUrls hg="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" dm="http://flybase.org/reports/$$" ce="http://www.wormbase.org/db/gene/gene?name=$$" rn="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" sacCer="https://www.yeastgenome.org/locus/$$" danRer="https://zfin.org/$$" mm="http://www.informatics.jax.org/marker/$$" xenTro="https://www.xenbase.org/gene/showgene.do?method=display&geneId=$$"
 dbPrefixLabels hg="HGNC" dm="FlyBase" ce="WormBase" rn="RGD" sacCer="SGD" danRer="ZFIN" mm="MGI" xenTro="XenBase"
 
         track ncbiRefSeq
-        parent refSeqComposite off
+        parent refSeqComposite on
         color 12,12,120
         shortLabel RefSeq All
         longLabel NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*)
         idXref ncbiRefSeqLink mrnaAcc name
         baseColorUseCds given
         baseColorDefault genomicCodons
         priority 1
 
         track ncbiRefSeqCurated
         color 12,12,120
         parent refSeqComposite on
         shortLabel RefSeq Curated
         longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
         idXref ncbiRefSeqLink mrnaAcc name
         baseColorUseCds given