a6ccb02733b673a4cc4aa1ab14ed5af961593ee7
max
  Wed Nov 22 07:09:15 2023 -0800
removing OMIM snps from default display on GBIB, refs #32643

diff --git src/browserbox/root/updateBrowser.sh src/browserbox/root/updateBrowser.sh
index 42f466f..ea500a0 100755
--- src/browserbox/root/updateBrowser.sh
+++ src/browserbox/root/updateBrowser.sh
@@ -517,30 +517,32 @@
 chown www-data.www-data /usr/local/apache/htdocs/inc/globalNavBar.inc
 
 # make sure we have the right symlink to /media
 sudo ln -sfT /media /usr/local/apache/htdocs/folders
 sudo ln -sfT /data/trash /usr/local/apache/htdocs/trash
 
 # make sure this tableList is not there, it can break the box
 # hgcentral on hgdownload has tables missing: those with users and passwords
 mysql hgcentral -e 'drop table if exists tableList'
 
 # hide the really big tracks
 mysql hg19 -e 'update trackDb set visibility=0 where tableName like "cons%way"'
 mysql hg19 -e 'update trackDb set visibility=0 where tableName like "ucscRetroAli%"'
 mysql hg38 -e 'update trackDb set visibility=0 where tableName like "omimGene2"'
 mysql hg19 -e 'update trackDb set visibility=0 where tableName like "omimGene2"'
+mysql hg38 -e 'update trackDb set visibility=0 where tableName like "omimAvSnp"'
+mysql hg19 -e 'update trackDb set visibility=0 where tableName like "omimAvSnp"'
 
 # temporary fix for hgdownload problem, Oct 2014
 ls /data/mysql/eboVir3 > /dev/null 2> /dev/null && mysql eboVir3 -e 'drop table if exists history'
 
 # rsync tables on hgdownload are sometimes in a crashed state
 echo checking mysql tables
 #sudo myisamchk --force --silent --fast /data/mysql/hg19/*.MYI /data/mysql/hgcentral/*.MYI /data/mysql/hgFixed/*.MYI 2> /dev/null
 mysqlcheck --all-databases --auto-repair --quick --fast --silent
 
 #LATENCY=`ping genome.ucsc.edu -n -c1 -q | grep rtt | cut -d' ' -f4 | cut -d/ -f2 | cut -d. -f1`
 #if [ "$LATENCY" -gt "90" ]; then
 #echo making low-latency changes
 /usr/local/apache/cgi-bin/hgMirror postRsyncUpdates
 
 # the local-only hg.conf settings file has to exist as it is included from hg.conf