18bb1494b9c59d40aae9bb6fb3b49421bd3d9203 max Thu Nov 30 02:48:34 2023 -0800 docing chris new cool feature, refs #32487 diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index bace562..05914e2 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -37,39 +37,51 @@ <a href="http://varnomen.hgvs.org/" target="_blank">HGVS</a> terms</li> <li> HGVS and accession searches on outdated RefSeq accession versions is available on hg38</li> </ul> <p> To specify a genome position:</p> <ol> <li> Select the desired clade, genome and assembly</li> <li> Enter the desired query in the "Position/Search Term" box (see sample queries below)</li> <li> Click the "Go" button</li> </ol> + <p> -Note: A query may have multiple results. If this is the case, a results page will appear listing +A query may have multiple results. If this is the case, a results page will appear listing each result along with the track it is associated with. Once selected, the result will be displayed -in the Browser with a highlighted tag, making it easier to identify. Also, if you have further +in the Browser with a highlighted label, making it easier to identify. If you have further questions, you can search the <a href="/FAQ/index.html" target="_blank">Genome Browser FAQ</a> page and find links to further resources. Also, developers of track hubs can create <a href="hubQuickStartSearch.html" target="_blank">searchable track hubs</a> using the <a href="trix.html" target="_blank"><code>searchTrix</code></a> setting.</p> +<p> +To quickly jump to a codon or exon of a gene transcript:</p> +<ol> + <li> + Use one of the searches below to jump to a gene, to show all transcripts of a gene or range of interest + <li> + Right-click any transcript, select "Choose exon" or "Zoom to codon" and enter the exon + or codon position of interest +</ol> +</p> + <h2>Sample queries</h2> <p> Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed. <table border="1"> <tr><th width="200">Query</th><th width="250">Genome Browser Response</th></tr> <tr> <td>chr7</td> <td>Displays all of chromosome 7</td></tr> <tr> <td>chr3:1-1000000</td> <td>Displays the first million bases of chromosome 3, counting from the p-arm telomere</td></tr> <tr> <td>3:1-1000000</td>