417468b267382eaa03b7307439b4cb43aaab10f0
max
  Fri Dec 1 02:22:41 2023 -0800
hide some tracks on GBIC update, refs #32693

diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh
index 1eefcc8..0269374 100644
--- src/product/installer/browserSetup.sh
+++ src/product/installer/browserSetup.sh
@@ -1841,30 +1841,32 @@
    echo updating GBDB: $DBS
    for db in $DBS; do 
        echo2 syncing gbdb: $db
        rsync -avp $RSYNCOPTS $HGDOWNLOAD::gbdb/$db/ $GBDBDIR/$db/ 
    done
 
    # update the mysql DBs
    stopMysql
    DBS=`ls /var/lib/mysql/ | egrep -v '(Trash$)|(hgTemp)|(^ib_)|(^ibdata)|(^aria)|(^mysql)|(performance)|(.flag$)|(multi-master.info)|(sys)|(lost.found)|(hgcentral)'`
    for db in $DBS; do 
        echo2 syncing full mysql database: $db
        $RSYNC --update --progress -avp $RSYNCOPTS $HGDOWNLOAD::mysql/$db/ $MYSQLDIR/$db/
    done
    startMysql
 
+   hideSomeTracks
+
    echo2 update finished
 }
 
 function addTools {
    rsync -avP hgdownload.soe.ucsc.edu::genome/admin/exe/linux.x86_64/ /usr/local/bin/
    rm -rf /usr/local/bin/blat.tmp # in case an old one is still there
    mv /usr/local/bin/blat /usr/local/bin/blat.tmp # tools under the BLAT license are separated into their own directory
    mv /usr/local/bin/blat.tmp/* /usr/local/bin/
    rmdir /usr/local/bin/blat.tmp
    echo2 The UCSC User Tools were copied to /usr/local/bin
    echo2 Please note that most of the tools require an .hg.conf file in the users
    echo2 home directory. A very minimal .hg.conf file can be found here:
    echo2 "http://genome-source.soe.ucsc.edu/gitlist/kent.git/blob/master/src/product/minimal.hg.conf"
 }