7e9ec699b6d233213aca70776b2e89a0cc02f976 max Wed Nov 29 13:41:32 2023 -0800 first test of a markdown based docs directory, no redmine yet diff --git docs/index.md docs/index.md new file mode 100644 index 0000000..e7b941f --- /dev/null +++ docs/index.md @@ -0,0 +1,40 @@ +% A sample Markdown page + +[comment]: <> (QA: This is a comment, it will not appear in the HTML) + +# Overview of the Genome Browser + +The genome browser requires humans: + +- sample unnumbered list line 1 +- item 2 and `backticks` + +# Requirements + +A bulleted list: + +* There +* Here +* 'with links' map plotting tools <http://www.soest.hawaii.edu/gmt/> +* Redhat/Fedora/CentOS: `yum install libpng12 httpd ghostscript GMT hdf5 R libuuid-devel MySQL-python` + +A command: + + rsync -hna --stats rsync://hgdownload.soe.ucsc.edu/gbdb/ | egrep "Number of files:|total size is" + +A list and code under it: + +1. Topic 1 + + XBitHack on + <Directory /usr/local/apache/htdocs> + Options +Includes + </Directory> + +2. Topic 2 + + mysql -u browser -pgenome -e 'show tables;' mysql + + MariaDB can be run from the command line, and + the tables from the database MariaDB can be displayed. +