c6cd0772baa4f7bcf41e4b2d3bc0b409d7e494b0 max Mon Jan 8 05:23:45 2024 -0800 adding omim update freq, refs #32826 diff --git src/hg/makeDb/trackDb/human/omimGene2.html src/hg/makeDb/trackDb/human/omimGene2.html index 3c93b9d..22e5b9d 100644 --- src/hg/makeDb/trackDb/human/omimGene2.html +++ src/hg/makeDb/trackDb/human/omimGene2.html @@ -125,30 +125,34 @@ <LI>Entries in <TT>genemap.txt</TT> having disorder info were parsed and loaded into the <TT>omimPhenotype</TT> table. <LI>For each OMIM gene in the <TT>omim2gene</TT> table, the <A HREF="https://www.ncbi.nlm.nih.gov/gene" TARGET=_blank>Entrez Gene ID</A> was used to get the corresponding <a href="https://www.ncbi.nlm.nih.gov/refseq/" target="_blank">RefSeq Gene ID</a> via the <TT>refLink</TT> table, and the RefSeq ID was used to get the genomic location from the <TT>refGene</TT> table.* The OMIM gene IDs and corresponding RefSeq Gene locations were loaded into the <TT>omimGene2</tt> table, the primary table for this track. </P> </UL> <P> *The locations in the <TT>refGene</TT> table are from alignments of RefSeq Genes to the reference genome using BLAT. </P> +<h2>Data Updates</h2> +This track is automatically updated once a week from OMIM data. The most recent update time is shown +at the top of the track documentation page. + <h2>Data Access</h2> <p> Because OMIM has only allowed Data queries within individual chromosomes, no download files are available from the Genome Browser. Full genome datasets can be downloaded directly from the <a href="https://omim.org/downloads/" target="_blank">OMIM Downloads page</a>. All genome-wide downloads are freely available from OMIM after registration.</p> <p> If you need the OMIM data in exactly the format of the UCSC Genome Browser, for example if you are running a UCSC Genome Browser local installation (a partial "mirror"), please create a user account on omim.org and contact OMIM via <a href="https://omim.org/contact" target="_blank">https://omim.org/contact</a>. Send them your OMIM account name and request access to the UCSC Genome Browser "entitlement". They will then grant you access to a MySQL/MariaDB data dump that contains all UCSC Genome Browser OMIM tables.</p> <p>