File Changes for markd

v458_base to v459_preview (2023-12-11 to 2023-12-18) v459

• src/hg/hgTracks/decorator.c
  • lines changed 65, context: html, text, full: html, text
    d96ac78dc01133a55575481975194bfc1b8accc1 Tue Dec 12 13:11:04 2023 -0800
    Make glyph drawing code from decorators to being available to all of hgTracks. This is to allow for experimentation in using glyphs to draw SNPs. There is no functional changes, it just moves code around.
• src/hg/hgTracks/hgTracks.h
  • lines changed 21, context: html, text, full: html, text
    d96ac78dc01133a55575481975194bfc1b8accc1 Tue Dec 12 13:11:04 2023 -0800
    Make glyph drawing code from decorators to being available to all of hgTracks. This is to allow for experimentation in using glyphs to draw SNPs. There is no functional changes, it just moves code around.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 102, context: html, text, full: html, text
    d96ac78dc01133a55575481975194bfc1b8accc1 Tue Dec 12 13:11:04 2023 -0800
    Make glyph drawing code from decorators to being available to all of hgTracks. This is to allow for experimentation in using glyphs to draw SNPs. There is no functional changes, it just moves code around.
• src/hg/inc/decoration.h
  • lines changed 15, context: html, text, full: html, text
    d96ac78dc01133a55575481975194bfc1b8accc1 Tue Dec 12 13:11:04 2023 -0800
    Make glyph drawing code from decorators to being available to all of hgTracks. This is to allow for experimentation in using glyphs to draw SNPs. There is no functional changes, it just moves code around.
• src/hg/lib/decoration.c
  • lines changed 32, context: html, text, full: html, text
    d96ac78dc01133a55575481975194bfc1b8accc1 Tue Dec 12 13:11:04 2023 -0800
    Make glyph drawing code from decorators to being available to all of hgTracks. This is to allow for experimentation in using glyphs to draw SNPs. There is no functional changes, it just moves code around.
• src/inc/psl.h
  • lines changed 3, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/inc/pslTransMap.h
  • lines changed 3, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/lib/psl.c
  • lines changed 8, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/lib/pslTransMap.c
  • lines changed 24, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/utils/pslProtToRnaCoords/pslProtToRnaCoords.c
  • lines changed 90, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/utils/pslProtToRnaCoords/tests/expected/kgProtTest.psl
  • lines changed 38, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion
• src/utils/pslProtToRnaCoords/tests/expected/spGencodeTest.psl
  • lines changed 7, context: html, text, full: html, text
    5711ac6c2bcaeda814ae1049a0661f499775885e Wed Dec 13 00:36:12 2023 -0800
    change pslProtToRnaCoords to use common code with pslMap to convert protein/NA to CDS-coordinate/NA alignments. This will correctly remove overlapping blocks after conversion