68edf2faf95319175aafd4769d1b084cd6377664 max Thu Dec 14 05:23:13 2023 -0800 fixing up clinvar alpha track for dev, no redmine diff --git src/hg/makeDb/trackDb/human/clinvar.alpha.ra src/hg/makeDb/trackDb/human/clinvar.alpha.ra index 6fb7e04..c67ef78 100644 --- src/hg/makeDb/trackDb/human/clinvar.alpha.ra +++ src/hg/makeDb/trackDb/human/clinvar.alpha.ra @@ -1,27 +1,27 @@ track clinvar compositeTrack on shortLabel ClinVar Variants ALPHA longLabel ClinVar Variants ALPHA group phenDis visibility hide type bed 12 + noParentConfig on itemRgb on urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" scoreLabel ClinVar Star-Rating (0-4) -dataVersion /gbdb/$D/bbi/clinvar/version.txt +dataVersion /gbdb/$D/bbi/clinvarAlpha/version.txt track clinvarMain parent clinvar shortLabel ClinVar SNVs longLabel ClinVar Short Variants < 50bp visibility hide group phenDis itemRgb on priority 1 type bigBed 12 + showCfg on # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus filterType._clinSignCode multiple @@ -63,32 +63,32 @@ filterType._clinSignCode multiple filter._varLen 50:999999999 filterByRange._varLen on filterLimits._varLen 50:999999999 mouseOverField _mouseOver bigDataUrl /gbdb/$D/bbi/clinvarAlpha/clinvarCnv.bb mergeSpannedItems on urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" noScoreFilter on searchIndex _dbVarSsvId track clinvarSubLolly parent clinvar shortLabel ClinVar interp longLabel ClinVar SNVs submitted interpretations and evidence - bigDataUrl /gbdb/$D/clinvarSubLolly/clinvarSubLolly.bb - xrefDataUrl /gbdb/$D/clinvarSubLolly/clinvarSub.bb + bigDataUrl /gbdb/$D/clinvarSubLollyAlpha/clinvarSubLolly.bb + xrefDataUrl /gbdb/$D/clinvarSubLollyAlph/clinvarSub.bb type bigLolly group phenDis lollySizeField 10 yAxisNumLabels off lollyNoStems on configurable off skipFields reviewStatus yAxisLabel.0 0 on 150,150,150 OTH yAxisLabel.1 1 on 150,150,150 B yAxisLabel.2 2 on 150,150,150 LB yAxisLabel.3 3 on 150,150,150 VUS yAxisLabel.4 4 on 150,150,150 LP yAxisLabel.5 5 on 150,150,150 P lollyMaxSize 10 viewLimits 0:5