68edf2faf95319175aafd4769d1b084cd6377664
max
  Thu Dec 14 05:23:13 2023 -0800
fixing up clinvar alpha track for dev, no redmine

diff --git src/hg/makeDb/trackDb/human/clinvar.alpha.ra src/hg/makeDb/trackDb/human/clinvar.alpha.ra
index 6fb7e04..c67ef78 100644
--- src/hg/makeDb/trackDb/human/clinvar.alpha.ra
+++ src/hg/makeDb/trackDb/human/clinvar.alpha.ra
@@ -1,27 +1,27 @@
 track clinvar
 compositeTrack on
 shortLabel ClinVar Variants ALPHA
 longLabel ClinVar Variants ALPHA
 group phenDis
 visibility hide
 type bed 12 +
 noParentConfig on
 itemRgb on
 urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
 scoreLabel ClinVar Star-Rating (0-4)
-dataVersion /gbdb/$D/bbi/clinvar/version.txt
+dataVersion /gbdb/$D/bbi/clinvarAlpha/version.txt
 
         track clinvarMain
         parent clinvar
         shortLabel ClinVar SNVs
         longLabel ClinVar Short Variants < 50bp
         visibility hide
         group phenDis
         itemRgb on
         priority 1
         type bigBed 12 +
         showCfg on
         # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename
         # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though
         filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus
         filterType._clinSignCode multiple
@@ -63,32 +63,32 @@
         filterType._clinSignCode multiple
         filter._varLen 50:999999999
         filterByRange._varLen on
         filterLimits._varLen 50:999999999
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/bbi/clinvarAlpha/clinvarCnv.bb
         mergeSpannedItems on
         urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
         noScoreFilter on
         searchIndex _dbVarSsvId
 
         track clinvarSubLolly
         parent clinvar
         shortLabel ClinVar interp
         longLabel ClinVar SNVs submitted interpretations and evidence
-        bigDataUrl /gbdb/$D/clinvarSubLolly/clinvarSubLolly.bb
-        xrefDataUrl /gbdb/$D/clinvarSubLolly/clinvarSub.bb
+        bigDataUrl /gbdb/$D/clinvarSubLollyAlpha/clinvarSubLolly.bb
+        xrefDataUrl /gbdb/$D/clinvarSubLollyAlph/clinvarSub.bb
         type bigLolly
         group phenDis
         lollySizeField 10
         yAxisNumLabels off
         lollyNoStems on
         configurable off
         skipFields reviewStatus
         yAxisLabel.0 0 on 150,150,150 OTH
         yAxisLabel.1 1 on 150,150,150 B
         yAxisLabel.2 2 on 150,150,150 LB
         yAxisLabel.3 3 on 150,150,150 VUS
         yAxisLabel.4 4 on 150,150,150 LP
         yAxisLabel.5 5 on 150,150,150 P
         lollyMaxSize 10
         viewLimits 0:5