46776f7940c88ca220483c69dd6a9389c6f529e4 hiram Tue Dec 26 10:53:18 2023 -0800 update to bring in the two new HG002 assemblies GCA_018852605.2_ASM1885260v2 and GCA_018852615.2_ASM1885261v2 refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index c25c9e6..3d2b825 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -144,36 +144,40 @@ GCA_012275295.1_bMelUnd1.mat.Z birds GCA_014108255.1_mRhiFer1.p mammals GCA_014176215.1_mRouAeg1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017976375.1_bCucCan1.pri birds GCA_017976425.1_fToxJac2.pri fish GCA_018139145.1_ASM1813914v1 birds GCA_018296145.1_Otsh_v2.0 fish +GCA_018852605.1_HG002.alt.pat.f1_v2 primates +GCA_018852615.1_HG002.pri.mat.f1_v2 primates GCA_019393635.1_mDroGli1.pri mammals GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds GCA_020745735.1_sHemOce1.pat.X.cur. vertebrate GCA_020826845.1_mDicBic1.mat.cur mammals GCA_021462225.2_DD_fGirMul_XY1 fish +GCA_021950905.1_HG002.pat.cur.20211005 primates +GCA_021951015.1_HG002.mat.cur.20211005 primates GCA_023343835.1_bLagMut1_primary birds GCA_023634085.1_bFalChe1.pri birds GCA_023634155.1_bFalPer1.pri birds GCA_023638135.1_bFalBia1.pri birds GCA_025265405.1_mMesDen1_primary_haplotype mammals GCA_025583915.1_AnoSag2.1 vertebrate GCA_026419915.1_bHarHar1_primary_haplotype birds GCA_026419965.1_mKogBre1_haplotype_1 mammals GCA_027172205.1_rPodRaf1.pri vertebrate GCA_027358585.1_fPanHyp1.pri fish GCA_027406575.1_mNycCou1.pri mammals GCA_027409825.1_fScoJap1.pri fish GCA_027477595.1_bHaeMex1.pri birds GCA_027579445.1_bAmmNel1.pri birds GCA_027579695.1_fNeoGra1.pri fish @@ -222,30 +226,31 @@ GCA_905237065.2_Ssal_v3.1 fish GCA_905333055.1_ilManJurt1.1 invertebrate GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate GCA_910596095.1_fThuMac1.1 fish GCA_947179515.1_mApoSyl1.1 mammals GCA_947347685.1_fPlePla1.1 fish GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals +GCA_963514075.1_fConCon1.1 fish GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002855.3_ASM285v2 fungi GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates GCF_000005975.2_dyak_caf1 invertebrate GCF_000006175.1_ASM617v2 archaea