75ec54ad980f7e19a154aa28252485f5b28ac8c2 hiram Wed Dec 27 19:40:17 2023 -0800 adding 41 VGP assemblies refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 44a6ba4..5b7132a 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -89,111 +89,116 @@ 61156 GCA_011762505.1_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds 882753 GCA_013347815.1_fAntMac1.alt fish 8005 GCA_013347915.1_fEleEle1.alt fish 882753 GCA_013358685.1_fAntMac1.pri fish 118141 GCA_013368575.1_fMegCyp1.alt fish 48427 GCA_013368595.1_bNycGra1.alt birds 48427 GCA_013368605.1_bNycGra1.pri birds 59479 GCA_014108255.1_mRhiFer1.p mammals +2767082 GCA_014706295.1_ASM1470629v1 birds 129108 GCA_014839645.1_fXenCan1.alt fish 195821 GCA_014839685.1_fAnaAna1.pri fish 195821 GCA_014839705.1_fAnaAna1.alt fish 73324 GCA_014839755.1_bSylBor1.pri birds 73324 GCA_014839765.1_bSylBor1.alt birds 118200 GCA_014839825.1_bDryPub1.alt birds 118200 GCA_014839835.1_bDryPub1.pri birds 129108 GCA_014839995.1_fXenCan1.pri fish 42514 GCA_015220065.1_fPygNat1.alt fish 72105 GCA_015220095.1_fSebUmb1.alt fish 120794 GCA_015220155.1_bFalRus1.alt birds 488313 GCA_015220175.1_bPogPus1.alt birds 8469 GCA_015220195.2_rCheMyd1.alt.v2 reptiles 27675 GCA_015220265.1_mChoDid1.alt mammals 488313 GCA_015220805.1_bPogPus1.pri birds 43150 GCA_015227805.3_bHirRus1.pri.v3 birds 43150 GCA_015227815.3_bHirRus1.alt.v3 birds 10116 GCA_015244455.1_mRatBN7.1_alternate_haplotype mammals 9261 GCA_015852515.1_mTacAcu1.alt mammals +2700039 GCA_015852565.1_bf_hap-2 invertebrate 8790 GCA_016128335.1_ZJU1.0 birds 8790 GCA_016128335.2_ZJU2.0 birds 9606 GCA_016695395.2_mHomSap3.mat mammals 9606 GCA_016700455.2_mHomSap3.pat mammals 57068 GCA_016880875.1_bAcaChl1.alt birds 57068 GCA_016904835.1_bAcaChl1.pri birds 13397 GCA_017639455.1_sCarCar2.alt sharks 670352 GCA_017639475.1_bPluApr1.alt birds 670352 GCA_017639485.1_bPluApr1.pri birds 52777 GCA_017639555.1_bCicMag1.pri birds 148594 GCA_017639645.1_bFalNau1.mat birds 52777 GCA_017639665.1_bCicMag1.alt birds 946358 GCA_017639675.1_fAplTae1.pri fish 946358 GCA_017639685.1_fAplTae1.alt fish 1250792 GCA_017639755.1_fMelBoe1.alt fish 941984 GCA_017976295.1_fToxJac2.alt fish 55661 GCA_017976305.1_bCucCan1.alt birds 109905 GCA_017976315.1_fCheRos1.alt fish 55661 GCA_017976375.1_bCucCan1.pri birds 34773 GCA_018492705.1_fAloSap1.alt fish +2700040 GCA_019207075.1_Bb-hap invertebrate 33562 GCA_019395325.1_mDroGli1.alt mammals 75038 GCA_020382915.1_fScaArg1.alt fish 390368 GCA_020510965.1_fPhoLeu1.alt fish 390368 GCA_020510985.1_fPhoLeu1.pri fish 8895 GCA_020740585.1_bApuApu2.alt.cur birds 9447 GCA_020740595.1_mLemCat1.alt mammals 134902 GCA_020740675.1_bCorHaw1.alt.cur birds 51337 GCA_020740715.1_mJacJac1.pat.decon mammals 8895 GCA_020740795.1_bApuApu2.pri.cur birds 34787 GCA_020745675.1_fTauAds1.alt.cur fish 34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals +159646 GCA_023053635.1_rElgMul1.0.p reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals 246179 GCA_024294585.1_rVipLat1.pri reptiles 246179 GCA_024294605.1_rVipLat1.alt reptiles 48708 GCA_025094165.1_mMesDen1_alternate_haplotype mammals 286002 GCA_025201965.1_rGopFla2.pat.asm reptiles 48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 70687 GCA_026018925.1_mTupTan1 mammals +372063 GCA_026229955.1_mPerMan1.0.p mammals 202280 GCA_026419925.1_bHarHar1 birds 27615 GCA_026419965.1_mKogBre1_haplotype_1 mammals 27615 GCA_026419985.1_mKogBre1_haplotype_2 mammals 81927 GCA_026979555.1_bVidCha1_purged_dups_haplotype birds 81927 GCA_026979565.1_bVidCha1_merged_haplotype birds 65483 GCA_027172095.1_rPodRaf1.alt reptiles 233779 GCA_027382365.2_aSpeBom1.2.alt amphibians 310915 GCA_027382375.1_fPanHyp1.alt fish 9470 GCA_027406535.1_mNycCou1.alt mammals 30427 GCA_027406555.1_bHaeMex1.alt birds 9031 GCA_027408205.1_bGalGal5.alt birds 9031 GCA_027408225.1_bGalGal5.pri birds 9031 GCA_027408255.1_bGalGal4.alt birds 110931 GCA_027409165.1_mCynVol1.alt mammals 110931 GCA_027409185.1_mCynVol1.pri mammals @@ -235,88 +240,92 @@ 8905 GCA_028020825.1_bPodStr1.pri birds 9764 GCA_028021215.1_mEscRob2.pri mammals 9764 GCA_028021475.1_mEscRob2.alt mammals 1772091 GCA_028021495.1_fLycPai1.hap1 fish 1772091 GCA_028022725.1_fLycPai1.hap2 fish 33610 GCA_028022735.1_bGypBar2.pri birds 2746895 GCA_028023285.1_mBalRic1.hap2 mammals 9315 GCA_028372415.1_mMacEug1.pri mammals 8795 GCA_028389875.1_bPtePen1.pri birds 8795 GCA_028389885.1_bPtePen1.alt birds 9315 GCA_028389975.1_mMacEug1.alt mammals 34844 GCA_028451465.1_mEreDor1.pri mammals 75485 GCA_028500815.1_bRisTri1.patW.cur.20221130 birds 34844 GCA_028500835.1_mEreDor1.alt mammals 75485 GCA_028501385.1_bRisTri1.mat.cur.20221130 birds -27606 GCA_028571275.1_mEubGla1.hap1 mammals 27606 GCA_028564815.1_mEubGla1.hap2 mammals +27606 GCA_028571275.1_mEubGla1.hap1 mammals 77598 GCA_028571665.1_mHetBru1.alt mammals 77598 GCA_028571685.1_mHetBru1.pri mammals 9226 GCA_028858555.1_bAraAra1.hap2 birds 9117 GCA_028858595.1_bGruAme1.pat birds 57412 GCA_028858625.1_bColStr4.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals 1983395 GCA_030028105.1_sMobBir1.hap1 sharks +1983395 GCA_030028105.1_sMobBir1.hap1 sharks 29137 GCA_030035585.1_mDugDug1.hap1 mammals 261503 GCA_030035675.1_rRhiFlo1.hap2 reptiles -1983395 GCA_030028105.1_sMobBir1.hap1 sharks 1983395 GCA_030035685.1_sMobBir1.hap2 sharks 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles 79690 GCA_030144785.1_sHypSab1.hap2 sharks 79690 GCA_030144855.1_sHypSab1.hap1 sharks 118683 GCA_030412085.1_rCycPin1.hap2 reptiles 118683 GCA_030412105.1_rCycPin1.hap1 reptiles 9978 GCA_030435715.1_mOchPri1.hap2 mammals 9666 GCA_030435785.1_mMusLut2.alt mammals 9361 GCA_030445055.1_mDasNov1.hap1 mammals 930266 GCA_030448965.1_fSalBra1.hap1 fish 36300 GCA_030449815.1_bPelCri1.alt birds 930266 GCA_030463535.1_fSalBra1.hap2 fish 36300 GCA_030463565.1_bPelCri1.pri birds 48891 GCA_030490855.1_bPoeAtr1.hap2 birds 3053191 GCA_030684295.1_sSteTig4.hap2 sharks 9823 GCA_030704935.1_ASM3070493v1 mammals 8496 GCA_030867065.1_rAllMis1 reptiles 283338 GCA_030867085.1_rLiaOli1.hap2 reptiles 283338 GCA_030867105.1_rLiaOli1.hap1 reptiles 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds 37040 GCA_030936135.1_bGavSte3.hap2 birds 121349 GCA_031001685.1_rEryReg1.hap3 reptiles 121349 GCA_031021085.1_rEryReg1.hap2 reptiles 121349 GCA_031021105.1_rEryReg1.hap1 reptiles 37578 GCA_031468805.1_bMorBas2.hap1 birds 37578 GCA_031468815.1_bMorBas2.hap2 birds +175524 GCA_031876335.1_mHipLar1.pri mammals +111821 GCA_031877795.1_bStrAlu1.hap1 birds +10013 GCA_031878675.1_mThoBot2.hap1 mammals +161624 GCA_031885435.1_bPasSan2.pri birds 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles -44489 GCA_033958435.1_ASM3395843v1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles +44489 GCA_033958435.1_ASM3395843v1 reptiles 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -376,30 +385,31 @@ 36212 GCA_905171655.2_fTraTra1.2_alternate_haplotype fish 36212 GCA_905171665.2_fTraTra1.2 fish 8384 GCA_905171715.1_aBufBuf1.1_alternate_haplotype amphibians 8407 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