cc4c6b10e07399a96a261bd5912e1a96bf432011 hiram Wed Dec 27 09:48:37 2023 -0800 update VGP listings refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 8c3a417..905d966 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -258,30 +258,31 @@ 9226 GCA_028858755.1_bAraAra1.hap1 birds 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals +1983395 GCA_030028105.1_sMobBir1.hap1 sharks 29137 GCA_030035585.1_mDugDug1.hap1 mammals 261503 GCA_030035675.1_rRhiFlo1.hap2 reptiles 1983395 GCA_030028105.1_sMobBir1.hap1 sharks 1983395 GCA_030035685.1_sMobBir1.hap2 sharks 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles 79690 GCA_030144785.1_sHypSab1.hap2 sharks 79690 GCA_030144855.1_sHypSab1.hap1 sharks 118683 GCA_030412085.1_rCycPin1.hap2 reptiles 118683 GCA_030412105.1_rCycPin1.hap1 reptiles 9978 GCA_030435715.1_mOchPri1.hap2 mammals 9666 GCA_030435785.1_mMusLut2.alt mammals 9361 GCA_030445055.1_mDasNov1.hap1 mammals 930266 GCA_030448965.1_fSalBra1.hap1 fish 36300 GCA_030449815.1_bPelCri1.alt birds 930266 GCA_030463535.1_fSalBra1.hap2 fish @@ -547,30 +548,31 @@ 9031 GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w birds 13397 GCF_017639515.1_sCarCar2.pri sharks 148594 GCF_017639655.1_bFalNau1.pat birds 148594 GCF_017639655.2_bFalNau1.pat birds 1250792 GCF_017639745.1_fMelBoe1.pri fish 109905 GCF_017976325.1_fCheRos1.pri fish 55661 GCF_017976375.1_bCucCan1.pri birds 941984 GCF_017976425.1_fToxJac2.pri fish 34773 GCF_018492685.1_fAloSap1.pri fish 33562 GCF_019393635.1_mDroGli1.pri mammals 75038 GCF_020382885.2_fScaArg1.pri fish 9447 GCF_020740605.2_mLemCat1.pri mammals 51337 GCF_020740685.1_mJacJac1.mat.Y.cur mammals 134902 GCF_020740725.1_bCorHaw1.pri.cur birds 8895 GCF_020740795.1_bApuApu2.pri.cur birds +170820 GCF_020745735.1_sHemOce1.pat.X.cur. sharks 77932 GCF_020826845.1_mDicBic1.mat.cur mammals 208333 GCF_021462225.1_DD_fGirMul_XY1 fish 64668 GCF_023343835.1_bLagMut1_primary birds 345164 GCF_023634085.1_bFalChe1.pri birds 8954 GCF_023634155.1_bFalPer1.pri birds 345155 GCF_023638135.1_bFalBia1.pri birds 109475 GCF_024139225.1_mSunEtr1.pri.cur mammals 99487 GCF_024166365.1_mEleMax1_primary_haplotype mammals 286002 GCF_025201925.1_rGopFla2.mat.asm reptiles 202280 GCF_026419915.1_bHarHar1_primary_haplotype birds 27615 GCF_026419965.1_mKogBre1_haplotype_1 mammals 81927 GCF_026979565.1_bVidCha1_merged_haplotype birds 65483 GCF_027172205.1_rPodRaf1.pri reptiles 310915 GCF_027358585.1_fPanHyp1.pri fish 233779 GCF_027358695.1_aSpeBom1.2.pri amphibians @@ -578,30 +580,31 @@ 13676 GCF_027409825.1_fScoJap1.pri fish 2857394 GCF_027579445.1_bAmmNel1.pri birds 8345 GCF_027579735.1_aBomBom1.pri amphibians 42254 GCF_027595985.1_mSorAra2.pri mammals 2857398 GCF_027887145.1_bAmmCau1.pri birds 2991368 GCF_027887155.1_rMalTer1.hap1 reptiles 13616 GCF_027887165.1_mMonDom1.pri mammals 44398 GCF_028018845.1_bMelGeo1.pri birds 75485 GCF_028500815.1_bRisTri1.patW.cur.20221130 birds 9117 GCF_028858705.1_bGruAme1.mat birds 327740 GCF_029499605.1_aHylSar1.hap1 amphibians 2546036 GCF_029633865.1_fLamInc1.hap2 fish 460621 GCF_029931775.1_rEulEur1.hap1 reptiles 143292 GCF_030020395.1_mManPen7.hap1 mammals 575201 GCF_030028045.1_mHipAmp2.hap2 mammals +9978 GCF_030435755.1_mOchPri1.hap1 mammals 9666 GCF_030435805.1_mMusLut2.pri mammals 9361 GCF_030445035.1_mDasNov1.hap2 mammals 48891 GCF_030490865.1_bPoeAtr1.hap1 birds 3053191 GCF_030684315.1_sSteTig4.hap1 sharks 8496 GCF_030867095.1_rAllMis1 reptiles 8154 GCF_900246225.1_fAstCal1.2 fish 64144 GCF_900324465.2_fAnaTes1.2 fish 205130 GCF_900324485.2_fMasArm1.2 fish 223781 GCF_900496995.1_bAquChr1.2 birds 223781 GCF_900496995.4_bAquChr1.4 birds 56716 GCF_900634415.1_fCotGob3.1 fish 210632 GCF_900634625.1_fParRan2.1 fish 441366 GCF_900634775.1_fGouWil2.1 fish 158456 GCF_900634795.2_fBetSpl5.2 fish 158456 GCF_900634795.3_fBetSpl5.3 fish @@ -638,15 +641,16 @@ 91739 GCF_905147365.1_ilAriAges1.1 insects 116150 GCF_905163445.1_ilParAegt1.1 insects 8384 GCF_905171765.1_aBufBuf1.1 amphibians 8407 GCF_905171775.1_aRanTem1.1 amphibians 9860 GCF_910594005.1_mCerEla1.1 mammals 8240 GCF_910596095.1_fThuMac1.1 fish 8236 GCF_914725855.1_fThuAlb1.1 fish 9733 GCF_937001465.1_mOrcOrc1.1 mammals 10129 GCF_947179515.1_mApoSyl1.1 mammals 8262 GCF_947347685.1_fPlePla1.1 fish 9767 GCF_949987535.1_mBalAcu1.1 mammals 269649 GCF_950005125.1_mChiNiv1.1 mammals 90069 GCF_958295425.1_fSolSol10.1 fish 217509 GCF_963082965.1_fCarCar2.1 fish 98922 GCF_963259705.1_mMyoDau2.1 mammals +82655 GCF_963514075.1_fConCon1.1 fish