efbc896ec61ccbd94910a56f5baae6d35f93cd19
lrnassar
  Wed Dec 20 10:40:28 2023 -0800
Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991

diff --git src/hg/makeDb/doc/dosageSensitivityCollins.txt src/hg/makeDb/doc/dosageSensitivityCollins.txt
new file mode 100644
index 0000000..a0c993b
--- /dev/null
+++ src/hg/makeDb/doc/dosageSensitivityCollins.txt
@@ -0,0 +1,10 @@
+#Lou 12/202/2023
+
+#Download and scp dosage scores from https://zenodo.org/records/6347673
+mkdir /hive/data/outside/collinsHaploTriploScores
+cd /hive/data/outside/collinsHaploTriploScores
+
+wget https://hgdownload.soe.ucsc.edu/goldenPath/hg19/liftOver/hg19ToHg38.over.chain.gz
+gunzip hg19ToHg38.over.chain.gz
+
+python ~/kent/src/hg/makeDb/scripts/buildDosageSensitivityCollins.py