bad1c2af619824bbeff311b8f0b97d3dc75f9260 markd Thu Dec 21 00:45:15 2023 -0800 Work on being able to run tests in parallel. Due to timing, it might still have issues diff --git src/hg/utils/vcfToHgvs/tests/makefile src/hg/utils/vcfToHgvs/tests/makefile index 9da635a..ae8f8e6 100644 --- src/hg/utils/vcfToHgvs/tests/makefile +++ src/hg/utils/vcfToHgvs/tests/makefile @@ -1,20 +1,22 @@ kentSrc = ../../../.. include ${kentSrc}/inc/common.mk vcfToHgvs = ${DESTBINDIR}/vcfToHgvs +.NOTPARALLEL: # table is used by multiple tests + test:: loadTestSet PersonalisGroundTruth2017_agree PersonalisGroundTruth2017_disagree stopLoss ${MAKE} clean # Stable set of RefSeq transcript tables & files for testing Personalis variants: loadTestSet: hgLoadSqlTab test -verbose=0 chromInfo ../../../lib/chromInfo.sql PGTdb/chromInfo.tab hgLoadSqlTab test -verbose=0 chromAlias ../../../lib/chromAlias.sql PGTdb/chromAlias.tab hgLoadGenePred test -genePredExt ncbiRefSeq PGTdb/ncbiRefSeq.gp.gz hgLoadPsl test -verbose=0 -table=ncbiRefSeqPsl PGTdb/ncbiRefSeqPsl.psl.gz zcat PGTdb/ncbiRefSeqCds.tab.gz \ | hgLoadSqlTab test -verbose=0 ncbiRefSeqCds ~/kent/src/hg/lib/cdsSpec.sql stdin zcat PGTdb/ncbiRefSeqLink.tab.gz \ | hgLoadSqlTab test -verbose=0 ncbiRefSeqLink ~/kent/src/hg/lib/ncbiRefSeqLink.sql stdin zcat PGTdb/ncbiRefSeqPepTable.tab.gz \ | hgLoadSqlTab test -verbose=0 ncbiRefSeqPepTable ~/kent/src/hg/lib/pepPred.sql stdin