c319f541bd3c9d4930907b1a8fc09a1b342efe95
markd
  Fri Dec 22 12:50:23 2023 -0800
rename poorly name function

diff --git src/lib/psl.c src/lib/psl.c
index 8ba73f2..9a0fe14 100644
--- src/lib/psl.c
+++ src/lib/psl.c
@@ -1342,32 +1342,32 @@
 qStart = psl->qStarts[0];
 tStart = psl->tStarts[0];
 size = psl->blockSizes[last];
 qEnd = psl->qStarts[last] + size;
 tEnd = psl->tStarts[last] + size;
 if (psl->strand[0] == '-')
     reverseIntRange(&qStart, &qEnd, psl->qSize);
 if (psl->strand[1] == '-')
     reverseIntRange(&tStart, &tEnd, psl->tSize);
 psl->qStart = qStart;
 psl->qEnd = qEnd;
 psl->tStart = tStart;
 psl->tEnd = tEnd;
 }
 
-void pslRecalcBaseCounts(struct psl *psl)
-/* Update match/mismatch base counts in PSL, assuming everything is a match */
+void pslRecalcMatchCounts(struct psl *psl)
+/* Update the match/mismatch counts in PSL, assuming everything is a match. */
 {
 psl->match = psl->misMatch = psl->repMatch = psl->nCount = 0;
 for (int iBlk = 0; iBlk < psl->blockCount; iBlk++)
     psl->match += psl->blockSizes[iBlk];
 }
     
 struct psl *pslTrimToTargetRange(struct psl *oldPsl, int tMin, int tMax)
 /* Return psl trimmed to fit inside tMin/tMax.  Note this does not
  * update the match/misMatch and related fields. */
 {
 int newSize;
 int oldBlockCount = oldPsl->blockCount;
 boolean tIsRc = (oldPsl->strand[1] == '-');
 int newBlockCount = 0, completeBlockCount = 0;
 int i;