c319f541bd3c9d4930907b1a8fc09a1b342efe95
markd
  Fri Dec 22 12:50:23 2023 -0800
rename poorly name function

diff --git src/lib/pslTransMap.c src/lib/pslTransMap.c
index f53b8f9..96df825 100644
--- src/lib/pslTransMap.c
+++ src/lib/pslTransMap.c
@@ -48,31 +48,31 @@
 {
 return (pslType == pslTypeProtProt);
 }
 
 static boolean pslTypeTargetIsNa(enum pslType pslType)
 /* is the pslType indicate the target is a NA? */
 {
 return !pslTypeTargetIsProtein(pslType);
 }
 
 static void setPslBoundsCounts(struct psl* psl)
 /* set sequences bounds and counts from blocks on a PSL */
 {
 pslComputeInsertCounts(psl);
 pslRecalcBounds(psl);
-pslRecalcBaseCounts(psl);
+pslRecalcMatchCounts(psl);
 }
 
 static unsigned int roundUpToMultipleOf3(unsigned n) {
   return ((n + 2) / 3) * 3;
 }
 
 static unsigned blockOverlapAmt3(struct psl *psl,
                                  int iBlk)
 /* How much overlap is there with the next block.  This is the max of query
  * and target, rounded up to a multiple of three, since we are dealing with
  * protein -> NA.
  */
 {
 // care taken in subtraction because of unsigneds
 int tOver = (pslTStart(psl, iBlk + 1) < pslTEnd(psl, iBlk)) ?