bad1c2af619824bbeff311b8f0b97d3dc75f9260
markd
  Thu Dec 21 00:45:15 2023 -0800
Work on being able to run tests in parallel.  Due to timing, it might still have issues

diff --git src/utils/bedToBigBed/tests/makefile src/utils/bedToBigBed/tests/makefile
index e6ad09e..8efe27c 100644
--- src/utils/bedToBigBed/tests/makefile
+++ src/utils/bedToBigBed/tests/makefile
@@ -14,33 +14,33 @@
 testBbSize1: outputDir output/human.chromAlias.bb
 	${BINDIR}/${A} input/colored.genbank.bed output/human.chromAlias.bb output/colored.genbank.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as 
 	bigBedToBed output/colored.genbank.bb output/colored.genbank.bed
 	diff input/colored.genbank.bed output/colored.genbank.bed
 
 testBbSize2: outputDir output/human.chromAlias.bb
 	-${BINDIR}/${A} input/mixed.bed output/human.chromAlias.bb output/noFile.chromAlias.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as 2> output/mixed.err
 	diff expected/mixed.err output/mixed.err
 
 testRgb: outputDir
 	${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as input/itemRgb.bed input/chrom.sizes output/itemRgb.bb 2> /dev/null
 	bigBedToBed output/itemRgb.bb output/test_itemRgb.bed
 	diff input/itemRgb.bed output/test_itemRgb.bed
 
 testCompress: outputDir
-	${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as input/itemRgb.bed.gz input/chrom.sizes output/itemRgb.bb 2> /dev/null
-	bigBedToBed output/itemRgb.bb output/test_itemRgb.bed
-	diff input/itemRgb.bed output/test_itemRgb.bed
+	${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as input/itemRgb.bed.gz input/chrom.sizes output/itemRgbGz.bb 2> /dev/null
+	bigBedToBed output/itemRgbGz.bb output/test_itemRgbGz.bed
+	diff input/itemRgb.bed output/test_itemRgbGz.bed
 
 testOddSorted: outputDir
 	-${BINDIR}/${A} -extraIndex=name -type=bed12+16 -tab -as=../../..//hg/lib/gencodeBGP.as input/oddSorted.bed input/hg38.chrom.sizes output/oddSorted.bb
 	bigBedToBed output/oddSorted.bb output/oddSorted.bed
 	LC_ALL=C sort -k1,1 -k2,2n  input/oddSorted.bed > output/oddSorted.check.bed
 	diff output/oddSorted.check.bed output/oddSorted.bed
 	cut -f 4 input/oddSorted.bed > output/oddSorted.names
 	bigBedNamedItems output/oddSorted.bb output/oddSorted.names -nameFile stdout | LC_ALL=C sort -k1,1 -k2,2n >  output/searchNames.bed
 	diff output/oddSorted.bed output/searchNames.bed
 
 testNotSorted: outputDir
 	-${BINDIR}/${A} -type=bed12 input/notSorted.bed input/notSorted.chrom.sizes /dev/null 2> output/notSorted.err || true
 	diff expected/notSorted.err output/notSorted.err
 
 testMultiInsAtEnd: outputDir