bad1c2af619824bbeff311b8f0b97d3dc75f9260 markd Thu Dec 21 00:45:15 2023 -0800 Work on being able to run tests in parallel. Due to timing, it might still have issues diff --git src/utils/wigToBigWig/tests/makefile src/utils/wigToBigWig/tests/makefile index 0ae9a40..5fb8cc3 100644 --- src/utils/wigToBigWig/tests/makefile +++ src/utils/wigToBigWig/tests/makefile @@ -1,19 +1,22 @@ kentSrc = ../../.. A = ${DESTBINDIR}/wigToBigWig include ../../../inc/common.mk +# this can not be run in parallel due to each test removing and reusing output directories +.NOTPARALLEL: + test: test1 test2 test1: outputDir # generate big wigs ${A} input/testFixed.wig input/test.sizes tmp/testFixed.bigWig ${A} input/testVar.wig input/test.sizes tmp/testVar.bigWig ${A} input/testBedGraph.wig input/test.sizes tmp/testBedGraph.bigWig # get unscaled data back out bigWigToBedGraph tmp/testFixed.bigWig output/testFixed.bedGraph bigWigToBedGraph tmp/testVar.bigWig output/testVar.bedGraph bigWigToBedGraph tmp/testBedGraph.bigWig output/testBedGraph.bedGraph # generate summaries on testFixed at lots of resolutions bigWigSummary tmp/testFixed.bigWig chr7 115597761 115598761 1 > output/tf1.sum