18ba3d5532d8357b9d568a5f1280e0bf3e25967d hiram Tue Jan 9 10:04:44 2024 -0800 catching up VGP primary list with GenArk refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 9e94499..de57638 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -167,32 +167,32 @@ 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals -9031 GCA_024206055.2_ASM2420605v2 birds 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals +9031 GCA_024206055.2_ASM2420605v2 birds 246179 GCA_024294585.1_rVipLat1.pri reptiles 246179 GCA_024294605.1_rVipLat1.alt reptiles 10013 GCA_024803745.1_mThoBot1.0.p mammals 48708 GCA_025094165.1_mMesDen1_alternate_haplotype mammals 286002 GCA_025201965.1_rGopFla2.pat.asm reptiles 48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 70687 GCA_026018925.1_mTupTan1 mammals 372063 GCA_026229955.1_mPerMan1.0.p mammals 202280 GCA_026419925.1_bHarHar1 birds 27615 GCA_026419965.1_mKogBre1_haplotype_1 mammals 27615 GCA_026419985.1_mKogBre1_haplotype_2 mammals 81927 GCA_026979555.1_bVidCha1_purged_dups_haplotype birds 81927 GCA_026979565.1_bVidCha1_merged_haplotype birds 65483 GCA_027172095.1_rPodRaf1.alt reptiles 233779 GCA_027382365.2_aSpeBom1.2.alt amphibians @@ -238,30 +238,31 @@ 61452 GCA_028018655.1_mNeoNeb1.alt mammals 44398 GCA_028018845.1_bMelGeo1.pri birds 44398 GCA_028019105.1_bMelGeo1.alt birds 8905 GCA_028020675.1_bPodStr1.alt birds 8905 GCA_028020825.1_bPodStr1.pri birds 9764 GCA_028021215.1_mEscRob2.pri mammals 9764 GCA_028021475.1_mEscRob2.alt mammals 1772091 GCA_028021495.1_fLycPai1.hap1 fish 1772091 GCA_028022725.1_fLycPai1.hap2 fish 33610 GCA_028022735.1_bGypBar2.pri birds 2746895 GCA_028023285.1_mBalRic1.hap2 mammals 9315 GCA_028372415.1_mMacEug1.pri mammals 8795 GCA_028389875.1_bPtePen1.pri birds 8795 GCA_028389885.1_bPtePen1.alt birds 9315 GCA_028389975.1_mMacEug1.alt mammals +495146 GCA_028390025.1_aPseCor3.hap2 amphibians 34844 GCA_028451465.1_mEreDor1.pri mammals 75485 GCA_028500815.1_bRisTri1.patW.cur.20221130 birds 34844 GCA_028500835.1_mEreDor1.alt mammals 75485 GCA_028501385.1_bRisTri1.mat.cur.20221130 birds 27606 GCA_028564815.1_mEubGla1.hap2 mammals 27606 GCA_028571275.1_mEubGla1.hap1 mammals 77598 GCA_028571665.1_mHetBru1.alt mammals 77598 GCA_028571685.1_mHetBru1.pri mammals 9226 GCA_028858555.1_bAraAra1.hap2 birds 9117 GCA_028858595.1_bGruAme1.pat birds 57412 GCA_028858625.1_bColStr4.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish @@ -303,36 +304,40 @@ 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds 37040 GCA_030936135.1_bGavSte3.hap2 birds 121349 GCA_031001685.1_rEryReg1.hap3 reptiles 121349 GCA_031021085.1_rEryReg1.hap2 reptiles 121349 GCA_031021105.1_rEryReg1.hap1 reptiles 37578 GCA_031468805.1_bMorBas2.hap1 birds 37578 GCA_031468815.1_bMorBas2.hap2 birds 175524 GCA_031876335.1_mHipLar1.pri mammals 111821 GCA_031877785.1_bStrAlu1.hap2 birds 111821 GCA_031877795.1_bStrAlu1.hap1 birds 9802 GCA_031878655.1_mTapInd1.hap1 mammals 10013 GCA_031878665.1_mThoBot2.hap2 mammals 10013 GCA_031878675.1_mThoBot2.hap1 mammals +9802 GCA_031878705.1_mTapInd1.hap2 mammals 161624 GCA_031885435.1_bPasSan2.pri birds 238119 GCA_031893025.1_aLepFus1.hap1 amphibians +238119 GCA_031893055.1_aLepFus1.hap2 amphibians 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles +111125 GCA_032444005.1_aRanImi1.pri amphibians 3026461 GCA_033296515.1_rMacSuw1.hap1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles 44489 GCA_033958435.1_ASM3395843v1 reptiles +188344 GCA_034619465.1_bLepDis1.hap2 birds 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -501,30 +506,32 @@ 948025 GCA_963281105.1_fGymBra2.1_alternate_haplotype fish 56720 GCA_963383615.1_fLipPho2.1 fish 56720 GCA_963383635.1_fLipPho2.1_alternate_haplotype fish 39082 GCA_963383645.1_mMusAve1.1 mammals 39082 GCA_963383665.1_mMusAve1.1_alternate_haplotype mammals 61862 GCA_963455305.1_mPleAur1.1 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish 94984 GCA_963691815.1_fEchVip8.1 fish +29151 GCA_963692335.1_fOsmEpe2.1 fish +27697 GCA_963854185.1_fSarPil1.1 fish 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 59479 GCF_004115265.2_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals