1de6d513b0f0fdd55dee82f8f4dd2cd14bfb349f markd Thu Jan 11 19:13:08 2024 -0800 import of gencode 45lift37 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index eaeb5aa..8dd51dd 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,32 +23,32 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## preRelease = no #preRelease = yes #db = hg38 -#db = hg19 -db = mm39 +db = hg19 +#db = mm39 ifeq (${db},mm10) # mm10 lift back was never revewed and released grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M34 prevVer = M33