190f783626730bf88e10253b6f763f72a4bb190a
chmalee
  Fri Feb 16 11:48:28 2024 -0800
Staging gnomAD v3.1.1 non-cancer filter track, refs #32916

diff --git src/hg/makeDb/doc/hg38/gnomad.txt src/hg/makeDb/doc/hg38/gnomad.txt
index eb5cda9..5098a8b 100644
--- src/hg/makeDb/doc/hg38/gnomad.txt
+++ src/hg/makeDb/doc/hg38/gnomad.txt
@@ -245,15 +245,22 @@
         for c in {1..22} X Y
         do
             f=${gbdbPath}${tbl}/gnomad.exomes.v4.0.sites.chr${c}.vcf.bgz
             echo -e "${f}\tchr${c}" >> ${tbl}.txt
         done
     else
         for c in {1..22} X Y
         do
             f=${gbdbPath}${tbl}/gnomad.genomes.v4.0.sites.chr${c}.vcf.bgz
             echo -e "${f}\tchr${c}" >> ${tbl}.txt
         done
     fi
     tName="${tbl^}"
     hgLoadSqlTab hg38 gnomad${tName}V4 ~/kent/src/hg/lib/bbiChroms.sql genomes.txt
 done
+
+
+##############################################################################
+# Add cancer/non-cancer filter to gnomAD v3.1.1  - Feb 16, 2024 - ChrisL - DONE
+##############################################################################
+# see /hive/data/inside/gnomAD/v3.1.1/2024-02-12/README
+# for the steps