62ecd77e45bd8f2944233a1bd185512b0734607c max Tue Feb 13 10:03:05 2024 -0800 cirm page rename as per parisa diff --git src/hg/cirm/gateway/htdocs/cirmIndex.html src/hg/cirm/gateway/htdocs/cirmIndex.html deleted file mode 100755 index c0e49fb..0000000 --- src/hg/cirm/gateway/htdocs/cirmIndex.html +++ /dev/null @@ -1,142 +0,0 @@ -<!DOCTYPE html> -<!--#set var="TITLE" value="CIRM Stem Cell Hub at UCSC Homepage" --> - -<!--#include virtual="setRoot.html" --> - -<!--#include virtual="${ROOT}inc/header.html" --> - -<div class="cirm-page-body"> - <div class="cirm-page-title back-gray"> - <h5 class="cirm-page-title-text">Welcome to the SSPsyGene Staging Portal!</h5> - </div> - <div class="container-fluid"> - <div class="row" style="margin-bottom: 15px"> - <div class="card col-12"> - <div class="row" style="padding: 10px 0px"> - <div class="col-md-1 text-right"> - <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?cdwCommand=browseFiles" style="text-decoration:none"> - <span> - <br> - <i class="fas fa-search fa-4x text-dark-pink"></i> - </div> - <div class="col-md-2"> - <h3 class="text-dark-pink">Browse Files</h3> - <p> - Filter, view, and download files - </p> - More > - </span> - </a> - </div> - <div class="col-md-1 text-right"> - <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?hgsid=404732858_euZmAKjIhaPrZe0sWnFvKJdj2TYu&cdwCommand=browseDataSets" style="text-decoration:none"> - <span> - <br> - <i class="fas fa-project-diagram fa-4x text-light-blue"></i> - </div> - <div class="col-md-2"> - <h3 class="text-light-blue">View Datasets</h3> - <p> - Explore the datasets and assays available - </p> - More > - </span> - </a> - </div> - </div> - </div> - </div> - <div class="row" style="margin-bottom: 15px"> - <div class="card col-md-12"> - <div class="row no-gutters"> - <div class="card-body col-md-3"> - <img src="images/sspsygene_data_portal_home_img.png" class="img-fluid" alt=""> - </div> - <div class="col" style="padding: 0px 15px"> - <div class="card-body"> - <div class="row"> - <!-- - <div class="col-md-6"> - --> - <div class="col-md-12"> - <p class="card-text"> - Welcome to the DRACCs Data Portal, the central hub for accessing and exploring the data generated by the laboratories participating in the “Scalable and Systematic - Neurobiology of Psychiatric and Neurodevelopmental Disorder Risk Genes (SSPsyGene)” Consortium. This consortium, funded by the National Institute of Mental Health - (NIMH), is dedicated to systematically characterizing the genotypes and phenotypes of neurodevelopmental and psychiatric disorder risk gene deletion models. - To learn more about the labs are projects visit: <a href = "https://sspsygene.ucsc.edu/" target="_blank" rel="noopener noreferrer">https://sspsygene.ucsc.edu/<a/> - <p class="card-text"> - If you have any questions, or if you'd like to contribute data to the SSPsyGene Data Portal, - please contact our support team at <a href = "mailto:wranglers@ucsc.edu" target="_blank" rel="noopener noreferrer">wranglers@ucsc.edu</a></p> - - <!-- - </div> - <div class="col-md-6"> - <h6>What is the Stem Cell Hub?</h6> - <p class="card-text"> - The Stem Cell Hub combines state of the art software with careful - human curation. The software runs quality checks that ensure the - data is in the proper format, contains no contamination, that the DNA - aligns in expected places, that the level of mitochondrial and - ribosomal data are within expected range, and gathers statistics on - how well replicates agree using a number of statistical measures. The - system supports tagging the data using a flexible metadata system that - allows experiments to be described in a concise but rich manner that - reflects any natural hierarchies or control/experiment groups that are - part of the experimental design. The human curators work with the - contributing labs and the system to make sure that experiments are - described consistently across labs and that metadata tags exist to - describe even new, leading edge assays. The Stem Cell Hub can be - searched using either a faceted search or SQL like queries on the - metadata. The Hub can restrict access to certain data to specific - users to meet privacy requirements. - </p> - </div> - </div> - <hr> - <div class="row"> - <div class="col-md-12"> - --> - - </div> - </div> - </div> - </div> - </div> - </div> - </div> - <!-- Section for Heart/Brain of Cells links - <div class="row" style="margin-bottom: 15px"> - <div class="card col-md-12"> - <div class="row" style="padding-top: 15px"> - <div class="col-md-1"> - </div> - <div class="col-md-1 text-right"> - <br> - <i class="fas fa-brain fa-4x text-light-blue"></i> - </div> - <div class="col-md-4"> - <h1><a href="<!--#echo var='ROOT'-->dcg/brainOfCells">Brain of Cells</a></h1> - <p> - An analysis of CESCG and public developing brain data to discover new cell types and - their marker genes. - </div> - <div class="col-md-1 text-right"> - <br> - <i class="fas fa-heart fa-4x text-dark-pink"></i> - </div> - <div class="col-md-4"> - <h1><a href="<!--#echo var='ROOT'-->dcg/heartOfCells">Heart of Cells</a></h1> - <p> An analyis of developing heart data to discover new cell states, the - transistionary states between them, and the markers driving the movement from one - cell to another. - </div> - <div class="col-md-1"> - </div> - </div> - </div> - </div> - --> - </div> -</div> - -<!--#include virtual="${ROOT}inc/footer.html" -->