62ecd77e45bd8f2944233a1bd185512b0734607c max Tue Feb 13 10:03:05 2024 -0800 cirm page rename as per parisa diff --git src/hg/cirm/gateway/htdocs/sspsygene.html src/hg/cirm/gateway/htdocs/sspsygene.html new file mode 100755 index 0000000..c0e49fb --- /dev/null +++ src/hg/cirm/gateway/htdocs/sspsygene.html @@ -0,0 +1,142 @@ +<!DOCTYPE html> +<!--#set var="TITLE" value="CIRM Stem Cell Hub at UCSC Homepage" --> + +<!--#include virtual="setRoot.html" --> + +<!--#include virtual="${ROOT}inc/header.html" --> + +<div class="cirm-page-body"> + <div class="cirm-page-title back-gray"> + <h5 class="cirm-page-title-text">Welcome to the SSPsyGene Staging Portal!</h5> + </div> + <div class="container-fluid"> + <div class="row" style="margin-bottom: 15px"> + <div class="card col-12"> + <div class="row" style="padding: 10px 0px"> + <div class="col-md-1 text-right"> + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?cdwCommand=browseFiles" style="text-decoration:none"> + <span> + <br> + <i class="fas fa-search fa-4x text-dark-pink"></i> + </div> + <div class="col-md-2"> + <h3 class="text-dark-pink">Browse Files</h3> + <p> + Filter, view, and download files + </p> + More > + </span> + </a> + </div> + <div class="col-md-1 text-right"> + <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?hgsid=404732858_euZmAKjIhaPrZe0sWnFvKJdj2TYu&cdwCommand=browseDataSets" style="text-decoration:none"> + <span> + <br> + <i class="fas fa-project-diagram fa-4x text-light-blue"></i> + </div> + <div class="col-md-2"> + <h3 class="text-light-blue">View Datasets</h3> + <p> + Explore the datasets and assays available + </p> + More > + </span> + </a> + </div> + </div> + </div> + </div> + <div class="row" style="margin-bottom: 15px"> + <div class="card col-md-12"> + <div class="row no-gutters"> + <div class="card-body col-md-3"> + <img src="images/sspsygene_data_portal_home_img.png" class="img-fluid" alt=""> + </div> + <div class="col" style="padding: 0px 15px"> + <div class="card-body"> + <div class="row"> + <!-- + <div class="col-md-6"> + --> + <div class="col-md-12"> + <p class="card-text"> + Welcome to the DRACCs Data Portal, the central hub for accessing and exploring the data generated by the laboratories participating in the “Scalable and Systematic + Neurobiology of Psychiatric and Neurodevelopmental Disorder Risk Genes (SSPsyGene)” Consortium. This consortium, funded by the National Institute of Mental Health + (NIMH), is dedicated to systematically characterizing the genotypes and phenotypes of neurodevelopmental and psychiatric disorder risk gene deletion models. + To learn more about the labs are projects visit: <a href = "https://sspsygene.ucsc.edu/" target="_blank" rel="noopener noreferrer">https://sspsygene.ucsc.edu/<a/> + <p class="card-text"> + If you have any questions, or if you'd like to contribute data to the SSPsyGene Data Portal, + please contact our support team at <a href = "mailto:wranglers@ucsc.edu" target="_blank" rel="noopener noreferrer">wranglers@ucsc.edu</a></p> + + <!-- + </div> + <div class="col-md-6"> + <h6>What is the Stem Cell Hub?</h6> + <p class="card-text"> + The Stem Cell Hub combines state of the art software with careful + human curation. The software runs quality checks that ensure the + data is in the proper format, contains no contamination, that the DNA + aligns in expected places, that the level of mitochondrial and + ribosomal data are within expected range, and gathers statistics on + how well replicates agree using a number of statistical measures. The + system supports tagging the data using a flexible metadata system that + allows experiments to be described in a concise but rich manner that + reflects any natural hierarchies or control/experiment groups that are + part of the experimental design. The human curators work with the + contributing labs and the system to make sure that experiments are + described consistently across labs and that metadata tags exist to + describe even new, leading edge assays. The Stem Cell Hub can be + searched using either a faceted search or SQL like queries on the + metadata. The Hub can restrict access to certain data to specific + users to meet privacy requirements. + </p> + </div> + </div> + <hr> + <div class="row"> + <div class="col-md-12"> + --> + + </div> + </div> + </div> + </div> + </div> + </div> + </div> + <!-- Section for Heart/Brain of Cells links + <div class="row" style="margin-bottom: 15px"> + <div class="card col-md-12"> + <div class="row" style="padding-top: 15px"> + <div class="col-md-1"> + </div> + <div class="col-md-1 text-right"> + <br> + <i class="fas fa-brain fa-4x text-light-blue"></i> + </div> + <div class="col-md-4"> + <h1><a href="<!--#echo var='ROOT'-->dcg/brainOfCells">Brain of Cells</a></h1> + <p> + An analysis of CESCG and public developing brain data to discover new cell types and + their marker genes. + </div> + <div class="col-md-1 text-right"> + <br> + <i class="fas fa-heart fa-4x text-dark-pink"></i> + </div> + <div class="col-md-4"> + <h1><a href="<!--#echo var='ROOT'-->dcg/heartOfCells">Heart of Cells</a></h1> + <p> An analyis of developing heart data to discover new cell states, the + transistionary states between them, and the markers driving the movement from one + cell to another. + </div> + <div class="col-md-1"> + </div> + </div> + </div> + </div> + --> + </div> +</div> + +<!--#include virtual="${ROOT}inc/footer.html" -->