7256393cc0ec2ff7f9a2c3322c69ccf39b99e4db
max
  Fri Feb 9 09:51:55 2024 -0800
dbsnp label change, refs #32901

diff --git src/hg/lib/bigDbSnp.c src/hg/lib/bigDbSnp.c
index 62b7548..7c2ecc1 100644
--- src/hg/lib/bigDbSnp.c
+++ src/hg/lib/bigDbSnp.c
@@ -315,31 +315,31 @@
       "Variant is in ClinVar." },
     { bdsClinvarBenign,
       "Variant is in ClinVar with clinical significance of benign and/or likely benign." },
     { bdsClinvarConflicting,
       "Variant is in ClinVar with reports of both benign and pathogenic significance." },
     { bdsClinvarPathogenic,
       "Variant is in ClinVar with clinical significance of pathogenic and/or likely pathogenic." },
     { bdsClusterError,
       "This variant has the same start, end and class as another variant; "
       "they probably should have been merged into one variant." },
     { bdsCommonAll,
       "Variant is \"common\", i.e. has a Minor Allele Frequency of at least 1% "
       "in all projects reporting frequencies." },
     { bdsCommonSome,
       "Variant is \"common\", i.e. has a Minor Allele Frequency of at least 1% "
-      "in some, but not all, projects reporting frequencies." },
+      "in some, but not all, projects reporting frequencies. This is not the same as the Common dbSNP data, which is only comprised of variants from 1000 Genomes Phase 3 that have a MAF >= 1%" },
     { bdsDiffMajor,
       "Different frequency sources have different major alleles "
       "(see table of allele frequencies above)." },
     { bdsFreqIncomplete,
       "At least one project's frequency data is incomplete (only one allele reported)." },
     { bdsFreqIsAmbiguous,
       "At least one allele reported by at least one project "
       "contains an IUPAC ambiguous base (e.g. 'R' for 'A or G')." },
     { bdsFreqNotMapped,
       "At least one project reported frequencies on a different assembly, for which dbSNP does not "
       "provide a mapping.  The mapping on this assembly may have an issue." },
     { bdsFreqNotRefAlt,
       "The reference genome allele is not the major allele in at least one project." },
     { bdsMultiMap,
       "This variant has been mapped to more than one distinct genomic location." },