4ba0a7d92cc93673915bb6f24ae81435ea179ce3 hiram Wed Jan 31 17:02:58 2024 -0800 beginning to add a searchable table of genome meta data refs #23589; diff --git src/hg/lib/genomeData.as src/hg/lib/genomeData.as new file mode 100644 index 0000000..08c89c5 --- /dev/null +++ src/hg/lib/genomeData.as @@ -0,0 +1,41 @@ +table genomeData +"SQL table for NCBI assembly_summary data." + ( + string assemblyAccession; "assemblyAccession" + string bioproject; "bioproject" + string biosample; "biosample" + string wgsMaster; "wgsMaster" + string refseqCategory; "refseqCategory" + uint taxId; "taxId" + uint speciesTaxid; "speciesTaxid" + string organismName; "organismName" + string infraspecificName; "infraspecificName" + string isolate; "isolate" + string versionStatus; "versionStatus" + string assemblyLevel; "assemblyLevel" + string releaseType; "releaseType" + string genomeRep; "genomeRep" + string seqRelDate; "seqRelDate" + string asmName; "asmName" + string asmSubmitter; "asmSubmitter" + string gbrsPairedAsm; "gbrsPairedAsm" + string pairedAsmComp; "pairedAsmComp" + string ftpPath; "ftpPath" + string excludedFromRefseq; "excludedFromRefseq" + string relationToTypeMaterial; "relationToTypeMaterial" + ubyte assemblyType; "assemblyType" + string phyloGroup; "phyloGroup" + bigint genomeSize; "genomeSize" + bigint genomeSizeUngapped; "genomeSizeUngapped" + float gcPercent; "gcPercent" + ushort repliconCount; "repliconCount" + uint scaffoldCount; "scaffoldCount" + uint contigCount; "contigCount" + string annotationProvider; "annotationProvider" + string annotationName; "annotationName" + string annotationDate; "annotationDate" + string totalGeneCount; "totalGeneCount" + uint proteinCodingGeneCount; "proteinCodingGeneCount" + string nonCodingGeneCount; "nonCodingGeneCount" + string pubmedId; "pubmedId" + )