c8f3ff3c555def2c55f0c498fe0eb24df8c29b6c hiram Fri Feb 2 11:35:26 2024 -0800 name changed to asmSummary refs #23589 diff --git src/hg/lib/genomeData.as src/hg/lib/genomeData.as deleted file mode 100644 index 08c89c5..0000000 --- src/hg/lib/genomeData.as +++ /dev/null @@ -1,41 +0,0 @@ -table genomeData -"SQL table for NCBI assembly_summary data." - ( - string assemblyAccession; "assemblyAccession" - string bioproject; "bioproject" - string biosample; "biosample" - string wgsMaster; "wgsMaster" - string refseqCategory; "refseqCategory" - uint taxId; "taxId" - uint speciesTaxid; "speciesTaxid" - string organismName; "organismName" - string infraspecificName; "infraspecificName" - string isolate; "isolate" - string versionStatus; "versionStatus" - string assemblyLevel; "assemblyLevel" - string releaseType; "releaseType" - string genomeRep; "genomeRep" - string seqRelDate; "seqRelDate" - string asmName; "asmName" - string asmSubmitter; "asmSubmitter" - string gbrsPairedAsm; "gbrsPairedAsm" - string pairedAsmComp; "pairedAsmComp" - string ftpPath; "ftpPath" - string excludedFromRefseq; "excludedFromRefseq" - string relationToTypeMaterial; "relationToTypeMaterial" - ubyte assemblyType; "assemblyType" - string phyloGroup; "phyloGroup" - bigint genomeSize; "genomeSize" - bigint genomeSizeUngapped; "genomeSizeUngapped" - float gcPercent; "gcPercent" - ushort repliconCount; "repliconCount" - uint scaffoldCount; "scaffoldCount" - uint contigCount; "contigCount" - string annotationProvider; "annotationProvider" - string annotationName; "annotationName" - string annotationDate; "annotationDate" - string totalGeneCount; "totalGeneCount" - uint proteinCodingGeneCount; "proteinCodingGeneCount" - string nonCodingGeneCount; "nonCodingGeneCount" - string pubmedId; "pubmedId" - )