bcbf2dfc5f3cfe6c33b1cf8b630bfb11806e4dc3 hiram Mon Jan 29 16:47:04 2024 -0800 crispr track build refs #32827 diff --git src/hg/makeDb/doc/hs1/crispr.txt src/hg/makeDb/doc/hs1/crispr.txt new file mode 100644 index 0000000..bfc0886 --- /dev/null +++ src/hg/makeDb/doc/hs1/crispr.txt @@ -0,0 +1,43 @@ +########################################################################## +### adding crispr track to hs1 browser +########################################################################## +### (DONE - Hiram - 2023-12-24 - 2024-01-05) + +mkdir /hive/data/genomes/hs1/bed/crisprAll +cd /hive/data/genomes/hs1/bed/crisprAll + +time (~/kent/src/hg/utils/automation/doCrispr.pl \ + -forHub -stop=guides -buildDir=`pwd` -smallClusterHub=hgwdev hs1) \ + > guides.log 2>&1 + +real 60m0.007s +user 0m0.077s +sys 0m0.052s + +time (~/kent/src/hg/utils/automation/doCrispr.pl -continue=ranges \ + -forHub -stop=guides -buildDir=`pwd` -smallClusterHub=hgwdev hs1) \ + > ranges.log 2>&1 + +real 4m37.523s +user 0m0.136s +sys 0m0.106s + + +time (~/kent/src/hg/utils/automation/doCrispr.pl -continue=specScoreJobList \ + -forHub -stop=load -buildDir=`pwd` -smallClusterHub=hgwdev hs1) \ + > load.log 2>&1 + +real 9733m25.872s +user 0m2.929s +sys 0m3.832s + +time (~/kent/src/hg/utils/automation/doCrispr.pl -continue=cleanup \ + -forHub -buildDir=`pwd` -smallClusterHub=hgwdev hs1) \ + > cleanup.log 2>&1 + +real 196m33.622s +user 0m0.090s +sys 0m0.048s + + +##########################################################################