c8f3ff3c555def2c55f0c498fe0eb24df8c29b6c
hiram
  Fri Feb 2 11:35:26 2024 -0800
name changed to asmSummary refs #23589

diff --git src/hg/inc/genomeData.h src/hg/inc/genomeData.h
deleted file mode 100644
index a6fbcaa..0000000
--- src/hg/inc/genomeData.h
+++ /dev/null
@@ -1,117 +0,0 @@
-/* genomeData.h was originally generated by the autoSql program, which also 
- * generated genomeData.c and genomeData.sql.  This header links the database and
- * the RAM representation of objects. */
-
-#ifndef GENOMEDATA_H
-#define GENOMEDATA_H
-
-#include "jksql.h"
-#define GENOMEDATA_NUM_COLS 37
-
-extern char *genomeDataCommaSepFieldNames;
-
-struct genomeData
-/* SQL table for NCBI assembly_summary data. */
-    {
-    struct genomeData *next;  /* Next in singly linked list. */
-    char *assemblyAccession;	/* assemblyAccession */
-    char *bioproject;	/* bioproject */
-    char *biosample;	/* biosample */
-    char *wgsMaster;	/* wgsMaster */
-    char *refseqCategory;	/* refseqCategory */
-    unsigned *taxId;	/* taxId */
-    unsigned *speciesTaxid;	/* speciesTaxid */
-    char *organismName;	/* organismName */
-    char *infraspecificName;	/* infraspecificName */
-    char *isolate;	/* isolate */
-    char *versionStatus;	/* versionStatus */
-    char *assemblyLevel;	/* assemblyLevel */
-    char *releaseType;	/* releaseType */
-    char *genomeRep;	/* genomeRep */
-    char *seqRelDate;	/* seqRelDate */
-    char *asmName;	/* asmName */
-    char *asmSubmitter;	/* asmSubmitter */
-    char *gbrsPairedAsm;	/* gbrsPairedAsm */
-    char *pairedAsmComp;	/* pairedAsmComp */
-    char *ftpPath;	/* ftpPath */
-    char *excludedFromRefseq;	/* excludedFromRefseq */
-    char *relationToTypeMaterial;	/* relationToTypeMaterial */
-    unsigned char *assemblyType;	/* assemblyType */
-    char *phyloGroup;	/* phyloGroup */
-    long long *genomeSize;	/* genomeSize */
-    long long *genomeSizeUngapped;	/* genomeSizeUngapped */
-    float *gcPercent;	/* gcPercent */
-    unsigned short *repliconCount;	/* repliconCount */
-    unsigned *scaffoldCount;	/* scaffoldCount */
-    unsigned *contigCount;	/* contigCount */
-    char *annotationProvider;	/* annotationProvider */
-    char *annotationName;	/* annotationName */
-    char *annotationDate;	/* annotationDate */
-    char *totalGeneCount;	/* totalGeneCount */
-    unsigned *proteinCodingGeneCount;	/* proteinCodingGeneCount */
-    char *nonCodingGeneCount;	/* nonCodingGeneCount */
-    char *pubmedId;	/* pubmedId */
-    };
-
-void genomeDataStaticLoadWithNull(char **row, struct genomeData *ret);
-/* Load a row from genomeData table into ret.  The contents of ret will
- * be replaced at the next call to this function. */
-
-struct genomeData *genomeDataLoadByQuery(struct sqlConnection *conn, char *query);
-/* Load all genomeData from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with genomeDataFreeList(). */
-
-void genomeDataSaveToDb(struct sqlConnection *conn, struct genomeData *el, char *tableName, int updateSize);
-/* Save genomeData as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. This function automatically escapes quoted strings for mysql. */
-
-struct genomeData *genomeDataLoadWithNull(char **row);
-/* Load a genomeData from row fetched with select * from genomeData
- * from database.  Dispose of this with genomeDataFree(). */
-
-struct genomeData *genomeDataLoadAll(char *fileName);
-/* Load all genomeData from whitespace-separated file.
- * Dispose of this with genomeDataFreeList(). */
-
-struct genomeData *genomeDataLoadAllByChar(char *fileName, char chopper);
-/* Load all genomeData from chopper separated file.
- * Dispose of this with genomeDataFreeList(). */
-
-#define genomeDataLoadAllByTab(a) genomeDataLoadAllByChar(a, '\t');
-/* Load all genomeData from tab separated file.
- * Dispose of this with genomeDataFreeList(). */
-
-struct genomeData *genomeDataCommaIn(char **pS, struct genomeData *ret);
-/* Create a genomeData out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new genomeData */
-
-void genomeDataFree(struct genomeData **pEl);
-/* Free a single dynamically allocated genomeData such as created
- * with genomeDataLoad(). */
-
-void genomeDataFreeList(struct genomeData **pList);
-/* Free a list of dynamically allocated genomeData's */
-
-void genomeDataOutput(struct genomeData *el, FILE *f, char sep, char lastSep);
-/* Print out genomeData.  Separate fields with sep. Follow last field with lastSep. */
-
-#define genomeDataTabOut(el,f) genomeDataOutput(el,f,'\t','\n');
-/* Print out genomeData as a line in a tab-separated file. */
-
-#define genomeDataCommaOut(el,f) genomeDataOutput(el,f,',',',');
-/* Print out genomeData as a comma separated list including final comma. */
-
-void genomeDataJsonOutput(struct genomeData *el, FILE *f);
-/* Print out genomeData in JSON format. */
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-#endif /* GENOMEDATA_H */
-