9d4635d2821b3d8a73396728cbd9cd56ad842f7c wisulliv Fri Feb 9 15:54:43 2024 -0800 Updated Home and Data Images. diff --git src/hg/cirm/gateway/htdocs/cirmIndex.html src/hg/cirm/gateway/htdocs/cirmIndex.html index 5f4519c..c0e49fb 100755 --- src/hg/cirm/gateway/htdocs/cirmIndex.html +++ src/hg/cirm/gateway/htdocs/cirmIndex.html @@ -1,142 +1,142 @@ <!DOCTYPE html> <!--#set var="TITLE" value="CIRM Stem Cell Hub at UCSC Homepage" --> <!--#include virtual="setRoot.html" --> <!--#include virtual="${ROOT}inc/header.html" --> <div class="cirm-page-body"> <div class="cirm-page-title back-gray"> <h5 class="cirm-page-title-text">Welcome to the SSPsyGene Staging Portal!</h5> </div> <div class="container-fluid"> <div class="row" style="margin-bottom: 15px"> <div class="card col-12"> <div class="row" style="padding: 10px 0px"> <div class="col-md-1 text-right"> <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?cdwCommand=browseFiles" style="text-decoration:none"> <span> <br> <i class="fas fa-search fa-4x text-dark-pink"></i> </div> <div class="col-md-2"> <h3 class="text-dark-pink">Browse Files</h3> <p> Filter, view, and download files </p> More > </span> </a> </div> <div class="col-md-1 text-right"> <a href="<!--#echo var='ROOT'-->cgi-bin/cdwWebBrowse?hgsid=404732858_euZmAKjIhaPrZe0sWnFvKJdj2TYu&cdwCommand=browseDataSets" style="text-decoration:none"> <span> <br> <i class="fas fa-project-diagram fa-4x text-light-blue"></i> </div> <div class="col-md-2"> <h3 class="text-light-blue">View Datasets</h3> <p> Explore the datasets and assays available </p> More > </span> </a> </div> </div> </div> </div> <div class="row" style="margin-bottom: 15px"> <div class="card col-md-12"> <div class="row no-gutters"> <div class="card-body col-md-3"> - <img src="images/cirmInsulinCells.jpg" class="img-fluid" alt=""> + <img src="images/sspsygene_data_portal_home_img.png" class="img-fluid" alt=""> </div> <div class="col" style="padding: 0px 15px"> <div class="card-body"> <div class="row"> <!-- <div class="col-md-6"> --> <div class="col-md-12"> <p class="card-text"> Welcome to the DRACCs Data Portal, the central hub for accessing and exploring the data generated by the laboratories participating in the “Scalable and Systematic Neurobiology of Psychiatric and Neurodevelopmental Disorder Risk Genes (SSPsyGene)” Consortium. This consortium, funded by the National Institute of Mental Health (NIMH), is dedicated to systematically characterizing the genotypes and phenotypes of neurodevelopmental and psychiatric disorder risk gene deletion models. To learn more about the labs are projects visit: <a href = "https://sspsygene.ucsc.edu/" target="_blank" rel="noopener noreferrer">https://sspsygene.ucsc.edu/<a/> <p class="card-text"> If you have any questions, or if you'd like to contribute data to the SSPsyGene Data Portal, please contact our support team at <a href = "mailto:wranglers@ucsc.edu" target="_blank" rel="noopener noreferrer">wranglers@ucsc.edu</a></p> <!-- </div> <div class="col-md-6"> <h6>What is the Stem Cell Hub?</h6> <p class="card-text"> The Stem Cell Hub combines state of the art software with careful human curation. The software runs quality checks that ensure the data is in the proper format, contains no contamination, that the DNA aligns in expected places, that the level of mitochondrial and ribosomal data are within expected range, and gathers statistics on how well replicates agree using a number of statistical measures. The system supports tagging the data using a flexible metadata system that allows experiments to be described in a concise but rich manner that reflects any natural hierarchies or control/experiment groups that are part of the experimental design. The human curators work with the contributing labs and the system to make sure that experiments are described consistently across labs and that metadata tags exist to describe even new, leading edge assays. The Stem Cell Hub can be searched using either a faceted search or SQL like queries on the metadata. The Hub can restrict access to certain data to specific users to meet privacy requirements. </p> </div> </div> <hr> <div class="row"> <div class="col-md-12"> --> </div> </div> </div> </div> </div> </div> </div> <!-- Section for Heart/Brain of Cells links <div class="row" style="margin-bottom: 15px"> <div class="card col-md-12"> <div class="row" style="padding-top: 15px"> <div class="col-md-1"> </div> <div class="col-md-1 text-right"> <br> <i class="fas fa-brain fa-4x text-light-blue"></i> </div> <div class="col-md-4"> <h1><a href="<!--#echo var='ROOT'-->dcg/brainOfCells">Brain of Cells</a></h1> <p> An analysis of CESCG and public developing brain data to discover new cell types and their marker genes. </div> <div class="col-md-1 text-right"> <br> <i class="fas fa-heart fa-4x text-dark-pink"></i> </div> <div class="col-md-4"> <h1><a href="<!--#echo var='ROOT'-->dcg/heartOfCells">Heart of Cells</a></h1> <p> An analyis of developing heart data to discover new cell states, the transistionary states between them, and the markers driving the movement from one cell to another. </div> <div class="col-md-1"> </div> </div> </div> </div> --> </div> </div> <!--#include virtual="${ROOT}inc/footer.html" -->