9b8bb908c285ca4cd641ebcb9451ffda0b11ae2d hiram Mon Mar 4 13:06:30 2024 -0800 catching up 232 alternate assemblies refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index d376a16..4a7764d 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -156,30 +156,31 @@ 8895 GCA_020740795.1_bApuApu2.pri.cur birds 34787 GCA_020745675.1_fTauAds1.alt.cur fish 34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals +9430 GCA_022682395.1_HLdesRot8B mammals 9430 GCA_022682495.1_HLdesRot8A mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles 159646 GCA_023053635.2_rElgMul1.1.pri reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals @@ -247,130 +248,151 @@ 44398 GCA_028018845.1_bMelGeo1.pri birds 44398 GCA_028019105.1_bMelGeo1.alt birds 8905 GCA_028020675.1_bPodStr1.alt birds 8905 GCA_028020825.1_bPodStr1.pri birds 9764 GCA_028021215.1_mEscRob2.pri mammals 9764 GCA_028021475.1_mEscRob2.alt mammals 1772091 GCA_028021495.1_fLycPai1.hap1 fish 1772091 GCA_028022725.1_fLycPai1.hap2 fish 33610 GCA_028022735.1_bGypBar2.pri birds 2746895 GCA_028023285.1_mBalRic1.hap2 mammals 9315 GCA_028372415.1_mMacEug1.pri mammals 8795 GCA_028389875.1_bPtePen1.pri birds 8795 GCA_028389885.1_bPtePen1.alt birds 9315 GCA_028389975.1_mMacEug1.alt mammals 495146 GCA_028390025.1_aPseCor3.hap2 amphibians +495146 GCA_028390055.1_aPseCor3.hap1 amphibians 34844 GCA_028451465.1_mEreDor1.pri mammals 75485 GCA_028500815.1_bRisTri1.patW.cur.20221130 birds 34844 GCA_028500835.1_mEreDor1.alt mammals 75485 GCA_028501385.1_bRisTri1.mat.cur.20221130 birds 27606 GCA_028564815.1_mEubGla1.hap2 mammals 27606 GCA_028571275.1_mEubGla1.hap1 mammals 77598 GCA_028571665.1_mHetBru1.alt mammals 77598 GCA_028571685.1_mHetBru1.pri mammals 9226 GCA_028858555.1_bAraAra1.hap2 birds 9117 GCA_028858595.1_bGruAme1.pat birds 57412 GCA_028858625.1_bColStr4.hap2 birds 57412 GCA_028858725.1_bColStr4.hap1 birds 9226 GCA_028858755.1_bAraAra1.hap1 birds 9598 GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates +9590 GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt primates 9600 GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates +9601 GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt primates 327740 GCA_029493135.1_aHylSar1.hap2 amphibians 2546036 GCA_029633845.1_fLamInc1.hap1 fish 27720 GCA_029633855.1_fHopMal1.hap1 fish 27720 GCA_029633875.1_fHopMal1.hap2 fish 460621 GCA_029931755.1_rEulEur1.hap2 reptiles 9785 GCA_030014295.1_mLoxAfr1.hap2 mammals 2290929 GCA_030014385.1_fTriRos1.hap1 fish 2290929 GCA_030015355.1_fTriRos1.hap2 fish 94835 GCA_030020295.1_rGavGan2.hap2 reptiles 9785 GCA_030020305.1_mLoxAfr1.hap1 mammals 94835 GCA_030020385.1_rGavGan2.hap1 reptiles 143292 GCA_030020945.1_mManPen7.hap2 mammals 29137 GCA_030020955.1_mDugDug1.hap2 mammals 575201 GCA_030028035.1_mHipAmp2.hap1 mammals 1983395 GCA_030028105.1_sMobBir1.hap1 sharks -1983395 GCA_030028105.1_sMobBir1.hap1 sharks 29137 GCA_030035585.1_mDugDug1.hap1 mammals 261503 GCA_030035675.1_rRhiFlo1.hap2 reptiles 1983395 GCA_030035685.1_sMobBir1.hap2 sharks 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles 79690 GCA_030144785.1_sHypSab1.hap2 sharks 79690 GCA_030144855.1_sHypSab1.hap1 sharks 118683 GCA_030412085.1_rCycPin1.hap2 reptiles 118683 GCA_030412105.1_rCycPin1.hap1 reptiles 9978 GCA_030435715.1_mOchPri1.hap2 mammals 9666 GCA_030435785.1_mMusLut2.alt mammals 9361 GCA_030445055.1_mDasNov1.hap1 mammals 930266 GCA_030448965.1_fSalBra1.hap1 fish 36300 GCA_030449815.1_bPelCri1.alt birds 930266 GCA_030463535.1_fSalBra1.hap2 fish 36300 GCA_030463565.1_bPelCri1.pri birds 48891 GCA_030490855.1_bPoeAtr1.hap2 birds 3053191 GCA_030684295.1_sSteTig4.hap2 sharks 9823 GCA_030704935.1_ASM3070493v1 mammals +1192867 GCA_030820635.1_KIZ_Lrid_1.0 birds 9438 GCA_030848825.1_DD_mTadBra1_pri mammals 8496 GCA_030867065.1_rAllMis1 reptiles 283338 GCA_030867085.1_rLiaOli1.hap2 reptiles 283338 GCA_030867105.1_rLiaOli1.hap1 reptiles 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds 37040 GCA_030936135.1_bGavSte3.hap2 birds 121349 GCA_031001685.1_rEryReg1.hap3 reptiles 1552295 GCA_031001765.1_BBF_mMolAlv_v1 mammals 121349 GCA_031021085.1_rEryReg1.hap2 reptiles 121349 GCA_031021105.1_rEryReg1.hap1 reptiles 37578 GCA_031468805.1_bMorBas2.hap1 birds 37578 GCA_031468815.1_bMorBas2.hap2 birds 175524 GCA_031876335.1_mHipLar1.pri mammals 111821 GCA_031877785.1_bStrAlu1.hap2 birds 111821 GCA_031877795.1_bStrAlu1.hap1 birds 9802 GCA_031878655.1_mTapInd1.hap1 mammals 10013 GCA_031878665.1_mThoBot2.hap2 mammals 10013 GCA_031878675.1_mThoBot2.hap1 mammals 9802 GCA_031878705.1_mTapInd1.hap2 mammals 161624 GCA_031885435.1_bPasSan2.pri birds 238119 GCA_031893025.1_aLepFus1.hap1 amphibians 238119 GCA_031893055.1_aLepFus1.hap2 amphibians 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles 111125 GCA_032444005.1_aRanImi1.pri amphibians 3026461 GCA_033296515.1_rMacSuw1.hap1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles 44489 GCA_033958435.1_ASM3395843v1 reptiles 188344 GCA_034619465.1_bLepDis1.hap2 birds +71010 GCA_035046495.1_rTilSci1.hap1 reptiles 71010 GCA_035046505.1_rTilSci1.hap2 reptiles 7740 GCA_035083965.1_klBraLanc5.hap2 invertebrate +7873 GCA_035084065.1_sHydCol1.hap1 sharks +212740 GCA_035084135.1_sHepPer1.hap2 sharks 212740 GCA_035084215.1_sHepPer1.hap1 sharks 7873 GCA_035084275.1_sHydCol1.hap2 sharks +51853 GCA_035125265.1_rCanAsp1.hap1 reptiles 51853 GCA_035149785.1_rCanAsp1.hap2 reptiles +7740 GCA_035149815.1_klBraLanc5.hap1 invertebrate +57060 GCA_035609135.1_aEleCoq1.hap2 amphibians 57060 GCA_035609145.1_aEleCoq1.hap1 amphibians 1914991 GCA_035770615.1_bMelMel2.pri birds +187106 GCA_036010745.1_bCalNic1.hap2 birds +8932 GCA_036010775.1_bColLiv1.mat birds 3111550 GCA_036010785.1_bAmmMar1.pri birds 187106 GCA_036013445.1_bCalNic1.hap1 birds 8932 GCA_036013475.1_bColLiv1.pat.W birds 472823 GCA_036169615.1_bHelExo1.hap1 birds +472823 GCA_036172335.1_bHelExo1.hap2 birds 191477 GCA_036172605.1_aPelFus1.pri amphibians 233781 GCA_036172795.1_aPelIbe1.pri amphibians 415032 GCA_036250125.1_bDixPip1.hap1 birds +415032 GCA_036250135.1_bDixPip1.hap2 birds 9838 GCA_036321535.1_mCamDro1.pat mammals +9838 GCA_036321565.1_mCamDro1.hap2 mammals +7924 GCA_036365475.1_fAmiCal2.hap2 fish 7792 GCA_036365495.1_sHetFra1.hap2 sharks +7792 GCA_036365525.1_sHetFra1.hap1 sharks 7924 GCA_036373705.1_fAmiCal2.hap1 fish 9725 GCA_036417435.1_mIniGeo1.hap1 mammals +9725 GCA_036417475.1_mIniGeo1.hap2 mammals 187382 GCA_036417535.1_bChlMac1.mat birds 48849 GCA_036417665.1_bPasDom1.hap1 birds 2696672 GCA_036417845.1_bAptMan1.hap1 birds +48849 GCA_036417895.1_bPasDom1.hap2 birds +2696672 GCA_036417975.1_bAptMan1.hap2 birds +187382 GCA_036418225.1_bChlMac1.pat birds +9796 GCA_036418255.1_mEquCab1.mat mammals 9796 GCA_036426135.1_mEquCab1.pat mammals 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish @@ -549,30 +571,31 @@ 61862 GCA_963455305.1_mPleAur1.1 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish 127875 GCA_963662255.1_bCinCin1.1 birds 94984 GCA_963691815.1_fEchVip8.1 fish 13677 GCA_963691925.1_fScoSco1.1 fish 29151 GCA_963692335.1_fOsmEpe2.1 fish 27697 GCA_963854185.1_fSarPil1.1 fish 52904 GCA_963854745.1_fScoMax1.1 fish +473322 GCA_963921795.1_fNanAch1.1 fish 9209 GCA_963921805.1_bPhaCar2.1 birds 443714 GCA_963924005.1_fProBol1.1 fish 1192867 GCA_963924245.1_bChrRid1.1 birds 59485 GCA_963924515.1_mVesMur1.1 mammals 13151 GCA_963924665.1_mMicMin1.1 mammals 9742 GCA_963924675.1_mPhoPho1.1 mammals 8237 GCA_963924715.1_fThuThy2.1 fish 9886 GCA_963930665.1_mMunRee1.1_alternate_haplotype mammals 56723 GCA_963930695.1_fLabBer1.1 fish 28680 GCA_963932015.1_bAnaAcu1.1 birds 8915 GCA_963932225.1_bLarFus1.1 birds 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds @@ -671,30 +694,31 @@ 233779 GCF_027358695.1_aSpeBom1.2.pri amphibians 9470 GCF_027406575.1_mNycCou1.pri primates 13676 GCF_027409825.1_fScoJap1.pri fish 30427 GCF_027477595.1_bHaeMex1.pri birds 29078 GCF_027574615.1_DD_ASM_mEF_20220401 mammals 2857394 GCF_027579445.1_bAmmNel1.pri birds 443677 GCF_027579695.1_fNeoGra1.pri fish 8345 GCF_027579735.1_aBomBom1.pri amphibians 42254 GCF_027595985.1_mSorAra2.pri mammals 2857398 GCF_027887145.1_bAmmCau1.pri birds 2991368 GCF_027887155.1_rMalTer1.hap1 reptiles 13616 GCF_027887165.1_mMonDom1.pri mammals 61452 GCF_028018385.1_mNeoNeb1.pri mammals 44398 GCF_028018845.1_bMelGeo1.pri birds 2746895 GCF_028023285.1_mBalRic1.hap2 mammals +8795 GCF_028389875.1_bPtePen1.pri birds 75485 GCF_028500815.1_bRisTri1.patW.cur.20221130 birds 27606 GCF_028564815.1_mEubGla1.1.hap2._XY mammals 9117 GCF_028858705.1_bGruAme1.mat birds 9598 GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri primates 9590 GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri primates 9600 GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri primates 9601 GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri primates 9595 GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri primates 9597 GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri primates 327740 GCF_029499605.1_aHylSar1.hap1 amphibians 2939378 GCF_029582105.1_OMel1.0 birds 2546036 GCF_029633865.1_fLamInc1.hap2 fish 460621 GCF_029931775.1_rEulEur1.hap1 reptiles 2290929 GCF_030014385.1_fTriRos1.hap1 fish 143292 GCF_030020395.1_mManPen7.hap1 mammals