ba39846fb30a64ba6df41c0aae781915ddf61c80 markd Mon Mar 4 22:15:06 2024 -0800 import of GENCODE VM35 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 7fafcbb..78b54be 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -22,33 +22,33 @@ tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## #preRelease = no preRelease = yes -db = hg38 +#db = hg38 #db = hg19 -#db = mm39 +db = mm39 ifeq (${db},mm10) # mm10 lift back was never revewed and released grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M35 prevVer = M34