Commits for braney

v461_base to v462_preview (2024-02-19 to 2024-02-26) v462

620a5662ff280f5ef66a061748b68e88c2824dfb Mon Feb 19 12:07:33 2024 -0800

• make sure coverage graphs always include zero
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

a764282569227de6bddc449427b869e0ca512ab1 Tue Feb 20 12:20:29 2024 -0800

• remove multiz logo prototype tracks
  • src/hg/makeDb/trackDb/human/hg38/multiz100Logo.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/multiz30Logo.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.470way.ra - lines changed 52, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

b9dd8c410acfb9a20dfb507b567a484b70a3c39b Tue Feb 20 12:36:29 2024 -0800

• check for NULL in exon mouseover code
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

2480da67cb1c86aa07059664ea1ea07e43686090 Fri Feb 23 12:18:59 2024 -0800

• hgc's neato chain visualization matrix wasn't using the right track names
  • src/hg/js/hgc.js - lines changed 2, context: html, text, full: html, text

c2f9a4ebe3f08ac661f2927860d73289072532c7 Fri Feb 23 12:20:12 2024 -0800

• first cut
  • src/hg/utils/exportedTracks/exportedTracks.as - lines changed 8, context: html, text, full: html, text

9c7cf25466929f9fd3137c3c131943b6b8c1ff17 Fri Feb 23 12:24:42 2024 -0800

• take out experimental HPRC chains tracks
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 1, context: html, text, full: html, text

7d86e0ffbe4295c91220ff671c3eeb2009d41408 Sun Feb 25 11:09:39 2024 -0800

• working on quickLift UI
  • src/hg/inc/exportedDataHubs.h - lines changed 64, context: html, text, full: html, text
  • src/hg/inc/quickLiftChain.h - lines changed 66, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.as - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.c - lines changed 123, context: html, text, full: html, text
  • src/hg/lib/exportedDataHubs.sql - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/quickLiftChain.as - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/quickLiftChain.c - lines changed 139, context: html, text, full: html, text
  • src/hg/lib/quickLiftChain.sql - lines changed 16, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/hprcQuickLift.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/makeExportHubs.txt - lines changed 16, context: html, text, full: html, text

c49da1b974470a3aef749f0702ce2c23d3e8d7ea Sun Feb 25 11:19:48 2024 -0800

• Revert "get hgTrackUi to do the right thing if "type bigBed" is specified." This reverts commit f3c7b669da695e4919410f08f0a3f6fa21778796. Conflicts: src/hg/lib/trackDbCustom.c
  • src/hg/inc/hui.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 9, context: html, text, full: html, text

9c21039dcd0fee54fdfd30253bc0088597df90e3 Sun Feb 25 11:48:47 2024 -0800

• another attempt to finish #19984
  • src/hg/inc/hui.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 21, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 7, context: html, text, full: html, text