907878c0e305c60aa4c3aa34716bf4bcbf3ba1a3 hiram Tue Feb 20 14:18:17 2024 -0800 catching up 9 assemblies refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 73669af..d376a16 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -327,47 +327,51 @@ 111821 GCA_031877795.1_bStrAlu1.hap1 birds 9802 GCA_031878655.1_mTapInd1.hap1 mammals 10013 GCA_031878665.1_mThoBot2.hap2 mammals 10013 GCA_031878675.1_mThoBot2.hap1 mammals 9802 GCA_031878705.1_mTapInd1.hap2 mammals 161624 GCA_031885435.1_bPasSan2.pri birds 238119 GCA_031893025.1_aLepFus1.hap1 amphibians 238119 GCA_031893055.1_aLepFus1.hap2 amphibians 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles 111125 GCA_032444005.1_aRanImi1.pri amphibians 3026461 GCA_033296515.1_rMacSuw1.hap1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles 44489 GCA_033958435.1_ASM3395843v1 reptiles 188344 GCA_034619465.1_bLepDis1.hap2 birds 71010 GCA_035046505.1_rTilSci1.hap2 reptiles +7740 GCA_035083965.1_klBraLanc5.hap2 invertebrate 212740 GCA_035084215.1_sHepPer1.hap1 sharks 7873 GCA_035084275.1_sHydCol1.hap2 sharks 51853 GCA_035149785.1_rCanAsp1.hap2 reptiles 57060 GCA_035609145.1_aEleCoq1.hap1 amphibians 1914991 GCA_035770615.1_bMelMel2.pri birds 3111550 GCA_036010785.1_bAmmMar1.pri birds 187106 GCA_036013445.1_bCalNic1.hap1 birds 8932 GCA_036013475.1_bColLiv1.pat.W birds 472823 GCA_036169615.1_bHelExo1.hap1 birds 191477 GCA_036172605.1_aPelFus1.pri amphibians 233781 GCA_036172795.1_aPelIbe1.pri amphibians 415032 GCA_036250125.1_bDixPip1.hap1 birds 9838 GCA_036321535.1_mCamDro1.pat mammals 7792 GCA_036365495.1_sHetFra1.hap2 sharks 7924 GCA_036373705.1_fAmiCal2.hap1 fish 9725 GCA_036417435.1_mIniGeo1.hap1 mammals +187382 GCA_036417535.1_bChlMac1.mat birds +48849 GCA_036417665.1_bPasDom1.hap1 birds 2696672 GCA_036417845.1_bAptMan1.hap1 birds +9796 GCA_036426135.1_mEquCab1.pat mammals 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -545,38 +549,41 @@ 61862 GCA_963455305.1_mPleAur1.1 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish 127875 GCA_963662255.1_bCinCin1.1 birds 94984 GCA_963691815.1_fEchVip8.1 fish 13677 GCA_963691925.1_fScoSco1.1 fish 29151 GCA_963692335.1_fOsmEpe2.1 fish 27697 GCA_963854185.1_fSarPil1.1 fish 52904 GCA_963854745.1_fScoMax1.1 fish +9209 GCA_963921805.1_bPhaCar2.1 birds 443714 GCA_963924005.1_fProBol1.1 fish 1192867 GCA_963924245.1_bChrRid1.1 birds 59485 GCA_963924515.1_mVesMur1.1 mammals 13151 GCA_963924665.1_mMicMin1.1 mammals 9742 GCA_963924675.1_mPhoPho1.1 mammals 8237 GCA_963924715.1_fThuThy2.1 fish 9886 GCA_963930665.1_mMunRee1.1_alternate_haplotype mammals 56723 GCA_963930695.1_fLabBer1.1 fish +28680 GCA_963932015.1_bAnaAcu1.1 birds +8915 GCA_963932225.1_bLarFus1.1 birds 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 59479 GCF_004115265.2_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals @@ -677,30 +684,31 @@ 44398 GCF_028018845.1_bMelGeo1.pri birds 2746895 GCF_028023285.1_mBalRic1.hap2 mammals 75485 GCF_028500815.1_bRisTri1.patW.cur.20221130 birds 27606 GCF_028564815.1_mEubGla1.1.hap2._XY mammals 9117 GCF_028858705.1_bGruAme1.mat birds 9598 GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri primates 9590 GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri primates 9600 GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri primates 9601 GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri primates 9595 GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri primates 9597 GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri primates 327740 GCF_029499605.1_aHylSar1.hap1 amphibians 2939378 GCF_029582105.1_OMel1.0 birds 2546036 GCF_029633865.1_fLamInc1.hap2 fish 460621 GCF_029931775.1_rEulEur1.hap1 reptiles +2290929 GCF_030014385.1_fTriRos1.hap1 fish 143292 GCF_030020395.1_mManPen7.hap1 mammals 575201 GCF_030028045.1_mHipAmp2.hap2 mammals 79690 GCF_030144855.1_sHypSab1.hap1 sharks 9978 GCF_030435755.1_mOchPri1.hap1 mammals 9666 GCF_030435805.1_mMusLut2.pri mammals 9361 GCF_030445035.1_mDasNov1.hap2 mammals 48891 GCF_030490865.1_bPoeAtr1.hap1 birds 3053191 GCF_030684315.1_sSteTig4.hap1 sharks 8496 GCF_030867095.1_rAllMis1 reptiles 37040 GCF_030936135.1_bGavSte3.hap2 birds 8154 GCF_900246225.1_fAstCal1.2 fish 64144 GCF_900324465.2_fAnaTes1.2 fish 205130 GCF_900324485.2_fMasArm1.2 fish 223781 GCF_900496995.1_bAquChr1.2 birds 223781 GCF_900496995.4_bAquChr1.4 birds