b7834b8f15822ed19ccfd6fb1ac210dd80ac6938 hiram Mon Feb 19 15:38:21 2024 -0800 update adding about 40 assemblies no redmine diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 7513b5b..73669af 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -1,16 +1,17 @@ 8296 GCA_002915635.3_AmbMex60DD amphibians +38626 GCA_003287225.2_phaCin_HiC mammals 30522 GCA_003369685.2_UOA_Angus_1 mammals 59729 GCA_003957525.1_bTaeGut1_v1.h birds 59729 GCA_003957525.2_bTaeGut1.4.alt birds 9244 GCA_003957555.2_bCalAnn1_v1.p birds 59729 GCA_003957565.2_bTaeGut1_v1.p birds 9244 GCA_003957575.1_bCalAnn1_v1.h birds 2489341 GCA_004011185.1_bStrHab1_v1.h birds 2489341 GCA_004027225.2_bStrHab1.2.pri birds 9258 GCA_004115175.2_mOrnAna1.alt.v3 mammals 9258 GCA_004115215.3_mOrnAna1.pri.v3 mammals 89673 GCA_004115245.1_mPhyDis1_v1.h mammals 89673 GCA_004115245.2_mPhyDis1.alti.v3 mammals 59479 GCA_004115265.2_mRhiFer1_v1.p mammals 59479 GCA_004115295.1_mRhiFer1_v1.h mammals 63155 GCA_007364235.1_fArcCen1_v1.h fish @@ -155,78 +156,83 @@ 8895 GCA_020740795.1_bApuApu2.pri.cur birds 34787 GCA_020745675.1_fTauAds1.alt.cur fish 34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745695.1_bHemCom1.alt.cur birds 243314 GCA_020745705.1_bHemCom1.pri.cur birds 170820 GCA_020745735.1_sHemOce1.pat.X.cur. sharks 170820 GCA_020745765.1_sHemOce1.mat.decon sharks 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 1118847 GCA_020745805.1_bTheCae1.alt.cur birds 297711 GCA_020746095.1_bTroSur1.alt.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds 77932 GCA_020826835.1_mDicBic1.pat.decon mammals 77932 GCA_020826845.1_mDicBic1.mat.cur mammals +9430 GCA_022682495.1_HLdesRot8A mammals 159646 GCA_023053635.1_rElgMul1.0.p reptiles +159646 GCA_023053635.2_rElgMul1.1.pri reptiles 64668 GCA_023344045.1_bLagMut1_alternate birds 345164 GCA_023634085.1_bFalChe1.pri birds 345164 GCA_023634115.1_bFalChe1.alt birds 8954 GCA_023634155.1_bFalPer1.pri birds 8954 GCA_023634185.1_bFalPer1.alt birds 345155 GCA_023634305.1_bFalBia1.alt birds 46513 GCA_023637925.1_DD_ASM_B1a birds 46513 GCA_023637945.1_DD_ASM_B1 birds 345155 GCA_023638135.1_bFalBia1.pri birds 48850 GCA_023851605.1_mTamTet1.pri mammals 48850 GCA_023853755.1_mTamTet1.alt mammals 109475 GCA_024140225.1_mSunEtr1.alt.cur mammals 99487 GCA_024166345.1_mEleMax1_alternate_haplotype mammals 9031 GCA_024206055.2_ASM2420605v2 birds 246179 GCA_024294585.1_rVipLat1.pri reptiles 246179 GCA_024294605.1_rVipLat1.alt reptiles 10013 GCA_024803745.1_mThoBot1.0.p mammals 48708 GCA_025094165.1_mMesDen1_alternate_haplotype mammals 286002 GCA_025201965.1_rGopFla2.pat.asm reptiles 48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 70687 GCA_026018925.1_mTupTan1 mammals 372063 GCA_026229955.1_mPerMan1.0.p mammals +124745 GCA_026230045.1_mCorTow1.0.hap2 mammals 202280 GCA_026419925.1_bHarHar1 birds 27615 GCA_026419965.1_mKogBre1_haplotype_1 mammals 27615 GCA_026419985.1_mKogBre1_haplotype_2 mammals 8319 GCA_026652325.1_ASM2665232v1 amphibians +2997257 GCA_026936385.1_BBF_mMolNig1_v1 mammals 81927 GCA_026979555.1_bVidCha1_purged_dups_haplotype birds 81927 GCA_026979565.1_bVidCha1_merged_haplotype birds 65483 GCA_027172095.1_rPodRaf1.alt reptiles 233779 GCA_027382365.2_aSpeBom1.2.alt amphibians 310915 GCA_027382375.1_fPanHyp1.alt fish 9470 GCA_027406535.1_mNycCou1.alt primates 30427 GCA_027406555.1_bHaeMex1.alt birds 9031 GCA_027408205.1_bGalGal5.alt birds 9031 GCA_027408225.1_bGalGal5.pri birds 9031 GCA_027408255.1_bGalGal4.alt birds 110931 GCA_027409165.1_mCynVol1.alt mammals 110931 GCA_027409185.1_mCynVol1.pri mammals 13676 GCA_027409835.1_fScoJap1.alt fish 8351 GCA_027410445.1_aDisPic1.pri amphibians 8351 GCA_027410455.1_aDisPic1.alt amphibians 9240 GCA_027474245.1_bSphHub1.pri birds 9240 GCA_027474345.1_bSphHub1.alt birds 30427 GCA_027477595.1_bHaeMex1.pri birds 9031 GCA_027557775.1_bGalGal4.pri birds 279927 GCA_027559525.1_bAcrTri1.alt birds 279927 GCA_027559615.1_bAcrTri1.pri birds +9440 GCA_027563665.1_DD_ASM_mAP_20210503 mammals 54386 GCA_027574665.1_bRhyJub1.pri birds 8345 GCA_027579415.1_aBomBom1.alt amphibians 2857394 GCA_027579445.1_bAmmNel1.pri birds 2857394 GCA_027579665.1_bAmmNel1.alt birds 443677 GCA_027579695.1_fNeoGra1.pri fish 443677 GCA_027579805.1_fNeoGra1.alt fish 54386 GCA_027595965.1_bRhyJub1.alt birds 42254 GCA_027595995.1_mSorAra2.alt mammals 150705 GCA_027789725.1_aDenEbr1.mat amphibians 150705 GCA_027789765.1_aDenEbr1.pat amphibians 69262 GCA_027887135.1_bAmmCau1.alt birds 69262 GCA_027887145.1_bAmmCau1.pri birds 2991368 GCA_027887205.1_rMalTer1.hap2 reptiles 13616 GCA_027917375.1_mMonDom1.alt mammals 8429 GCA_027917415.1_aGasCar1.hap2 amphibians @@ -290,58 +296,78 @@ 261503 GCA_030035715.1_rRhiFlo1.hap1 reptiles 79690 GCA_030144785.1_sHypSab1.hap2 sharks 79690 GCA_030144855.1_sHypSab1.hap1 sharks 118683 GCA_030412085.1_rCycPin1.hap2 reptiles 118683 GCA_030412105.1_rCycPin1.hap1 reptiles 9978 GCA_030435715.1_mOchPri1.hap2 mammals 9666 GCA_030435785.1_mMusLut2.alt mammals 9361 GCA_030445055.1_mDasNov1.hap1 mammals 930266 GCA_030448965.1_fSalBra1.hap1 fish 36300 GCA_030449815.1_bPelCri1.alt birds 930266 GCA_030463535.1_fSalBra1.hap2 fish 36300 GCA_030463565.1_bPelCri1.pri birds 48891 GCA_030490855.1_bPoeAtr1.hap2 birds 3053191 GCA_030684295.1_sSteTig4.hap2 sharks 9823 GCA_030704935.1_ASM3070493v1 mammals +9438 GCA_030848825.1_DD_mTadBra1_pri mammals 8496 GCA_030867065.1_rAllMis1 reptiles 283338 GCA_030867085.1_rLiaOli1.hap2 reptiles 283338 GCA_030867105.1_rLiaOli1.hap1 reptiles 30419 GCA_030867145.1_bOpiHoa1.hap1 birds 30419 GCA_030867165.1_bOpiHoa1.hap2 birds 37040 GCA_030936125.1_bGavSte3.hap1 birds 37040 GCA_030936135.1_bGavSte3.hap2 birds 121349 GCA_031001685.1_rEryReg1.hap3 reptiles +1552295 GCA_031001765.1_BBF_mMolAlv_v1 mammals 121349 GCA_031021085.1_rEryReg1.hap2 reptiles 121349 GCA_031021105.1_rEryReg1.hap1 reptiles 37578 GCA_031468805.1_bMorBas2.hap1 birds 37578 GCA_031468815.1_bMorBas2.hap2 birds 175524 GCA_031876335.1_mHipLar1.pri mammals 111821 GCA_031877785.1_bStrAlu1.hap2 birds 111821 GCA_031877795.1_bStrAlu1.hap1 birds 9802 GCA_031878655.1_mTapInd1.hap1 mammals 10013 GCA_031878665.1_mThoBot2.hap2 mammals 10013 GCA_031878675.1_mThoBot2.hap1 mammals 9802 GCA_031878705.1_mTapInd1.hap2 mammals 161624 GCA_031885435.1_bPasSan2.pri birds 238119 GCA_031893025.1_aLepFus1.hap1 amphibians 238119 GCA_031893055.1_aLepFus1.hap2 amphibians 142480 GCA_032164245.1_rSteOdo2_p1.0 reptiles 111125 GCA_032444005.1_aRanImi1.pri amphibians 3026461 GCA_033296515.1_rMacSuw1.hap1 reptiles 3026461 GCA_033349115.1_rMacSuw1.hap2 reptiles 44489 GCA_033958435.1_ASM3395843v1 reptiles 188344 GCA_034619465.1_bLepDis1.hap2 birds +71010 GCA_035046505.1_rTilSci1.hap2 reptiles +212740 GCA_035084215.1_sHepPer1.hap1 sharks +7873 GCA_035084275.1_sHydCol1.hap2 sharks +51853 GCA_035149785.1_rCanAsp1.hap2 reptiles +57060 GCA_035609145.1_aEleCoq1.hap1 amphibians +1914991 GCA_035770615.1_bMelMel2.pri birds +3111550 GCA_036010785.1_bAmmMar1.pri birds +187106 GCA_036013445.1_bCalNic1.hap1 birds +8932 GCA_036013475.1_bColLiv1.pat.W birds +472823 GCA_036169615.1_bHelExo1.hap1 birds +191477 GCA_036172605.1_aPelFus1.pri amphibians +233781 GCA_036172795.1_aPelIbe1.pri amphibians +415032 GCA_036250125.1_bDixPip1.hap1 birds +9838 GCA_036321535.1_mCamDro1.pat mammals +7792 GCA_036365495.1_sHetFra1.hap2 sharks +7924 GCA_036373705.1_fAmiCal2.hap1 fish +9725 GCA_036417435.1_mIniGeo1.hap1 mammals +2696672 GCA_036417845.1_bAptMan1.hap1 birds 8154 GCA_900246225.5_fAstCal1.3 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900324465.3_fAnaTes1.3 fish 205130 GCA_900324485.3_fMasArm1.3 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 210632 GCA_900634625.2_fParRan2.2 fish 441366 GCA_900634775.1_fGouWil2.1 fish 441366 GCA_900634775.2_fGouWil2.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 158456 GCA_900651605.2_fBetSpl5.4_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish @@ -425,30 +451,32 @@ 9733 GCA_937001455.1_mOrcOrc1.1_alternate_haplotype mammals 7955 GCA_944039255.1_fDanRer4.1_alternate_haplotype fish 7955 GCA_944039275.1_fDanRer4.1 fish 933932 GCA_946807865.1_fSilAri3.1_alternate_haplotype fish 933932 GCA_946808225.1_fSilAri3.1 fish 135647 GCA_947034865.1_fBarBar1.1 fish 135647 GCA_947034905.1_fBarBar1.1_alternate_haplotype fish 10129 GCA_947179515.1_mApoSyl1.1 mammals 10129 GCA_947179525.1_mApoSyl1.1_alternate_haplotype mammals 103942 GCA_947247025.1_rVipUrs1.1_alternate_haplotype reptiles 103942 GCA_947247035.1_rVipUrs1.1 reptiles 8262 GCA_947347695.1_fPlePla1.1_alternate_haplotype fish 8969 GCA_947461875.1_bHalAlb1.1 birds 8969 GCA_947461935.1_bHalAlb1.1_alternate_haplotype birds 38561 GCA_947561715.1_kaAscMent1.1 otherChordates +159417 GCA_947623445.1_kaClaLepa1.1 otherChordates +171736 GCA_947650265.1_fSymMel2.1 fish 161584 GCA_948146095.1_fSynAcu2.1_alternate_haplotype fish 161584 GCA_948146105.1_fSynAcu2.1 fish 58324 GCA_949152265.1_fPhoPho1.1 fish 58324 GCA_949152275.1_fPhoPho1.1_alternate_haplotype fish 8260 GCA_949316195.1_fPlaFle2.1_alternate_haplotype fish 8260 GCA_949316205.1_fPlaFle2.1 fish 134920 GCA_949316245.1_fPunPun2.1_alternate_haplotype fish 10090 GCA_949316305.1_mMusMuc1.1_alternate_haplotype mammals 10090 GCA_949316315.1_mMusMuc1.1 mammals 134920 GCA_949316345.1_fPunPun2.1 fish 8284 GCA_949319135.1_fSquCep2.1 fish 8284 GCA_949319155.1_fSquCep2.1_alternate_haplotype fish 27704 GCA_949357685.1_fGobGob1.1 fish 27704 GCA_949357705.1_fGobGob1.1_alternate_haplotype fish 1484357 GCA_949357725.1_fHypImm3.1 fish @@ -500,42 +528,55 @@ 187126 GCA_963082525.1_bNesMay2.1 birds 217509 GCA_963082795.1_fCarCar2.1_alternate_haplotype fish 431183 GCA_963082865.1_kaCorEumy4.1_alternate_haplotype otherChordates 431183 GCA_963082875.1_kaCorEumy4.1 otherChordates 148596 GCA_963210275.1_bFalPun1.1_alternate_haplotype birds 148596 GCA_963210335.1_bFalPun1.1 birds 98922 GCA_963242275.1_mMyoDau2.1_alternate_haplotype mammals 232653 GCA_963243765.1_bPsiEch3.1_alternate_haplotype birds 232653 GCA_963264785.1_bPsiEch3.1 birds 948025 GCA_963280865.1_fGymBra2.1 fish 948025 GCA_963281105.1_fGymBra2.1_alternate_haplotype fish 56720 GCA_963383615.1_fLipPho2.1 fish 56720 GCA_963383635.1_fLipPho2.1_alternate_haplotype fish 39082 GCA_963383645.1_mMusAve1.1 mammals 39082 GCA_963383665.1_mMusAve1.1_alternate_haplotype mammals +195075 GCA_963422515.1_fBleOce1.1 fish +1090481 GCA_963454915.1_fGymMic1.1 fish 61862 GCA_963455305.1_mPleAur1.1 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish +127875 GCA_963662255.1_bCinCin1.1 birds 94984 GCA_963691815.1_fEchVip8.1 fish +13677 GCA_963691925.1_fScoSco1.1 fish 29151 GCA_963692335.1_fOsmEpe2.1 fish 27697 GCA_963854185.1_fSarPil1.1 fish +52904 GCA_963854745.1_fScoMax1.1 fish +443714 GCA_963924005.1_fProBol1.1 fish +1192867 GCA_963924245.1_bChrRid1.1 birds +59485 GCA_963924515.1_mVesMur1.1 mammals +13151 GCA_963924665.1_mMicMin1.1 mammals +9742 GCA_963924675.1_mPhoPho1.1 mammals +8237 GCA_963924715.1_fThuThy2.1 fish +9886 GCA_963930665.1_mMunRee1.1_alternate_haplotype mammals +56723 GCA_963930695.1_fLabBer1.1 fish 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 59479 GCF_004115265.2_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals @@ -612,30 +653,31 @@ 8954 GCF_023634155.1_bFalPer1.pri birds 345155 GCF_023638135.1_bFalBia1.pri birds 109475 GCF_024139225.1_mSunEtr1.pri.cur mammals 99487 GCF_024166365.1_mEleMax1_primary_haplotype mammals 286002 GCF_025201925.1_rGopFla2.mat.asm reptiles 48708 GCF_025265405.1_mMesDen1_primary_haplotype mammals 202280 GCF_026419915.1_bHarHar1_primary_haplotype birds 27615 GCF_026419965.1_mKogBre1_haplotype_1 mammals 81927 GCF_026979565.1_bVidCha1_merged_haplotype birds 65483 GCF_027172205.1_rPodRaf1.pri reptiles 310915 GCF_027358585.1_fPanHyp1.pri fish 233779 GCF_027358695.1_aSpeBom1.2.pri amphibians 9470 GCF_027406575.1_mNycCou1.pri primates 13676 GCF_027409825.1_fScoJap1.pri fish 30427 GCF_027477595.1_bHaeMex1.pri birds +29078 GCF_027574615.1_DD_ASM_mEF_20220401 mammals 2857394 GCF_027579445.1_bAmmNel1.pri birds 443677 GCF_027579695.1_fNeoGra1.pri fish 8345 GCF_027579735.1_aBomBom1.pri amphibians 42254 GCF_027595985.1_mSorAra2.pri mammals 2857398 GCF_027887145.1_bAmmCau1.pri birds 2991368 GCF_027887155.1_rMalTer1.hap1 reptiles 13616 GCF_027887165.1_mMonDom1.pri mammals 61452 GCF_028018385.1_mNeoNeb1.pri mammals 44398 GCF_028018845.1_bMelGeo1.pri birds 2746895 GCF_028023285.1_mBalRic1.hap2 mammals 75485 GCF_028500815.1_bRisTri1.patW.cur.20221130 birds 27606 GCF_028564815.1_mEubGla1.1.hap2._XY mammals 9117 GCF_028858705.1_bGruAme1.mat birds 9598 GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri primates 9590 GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri primates